# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.92e-12 2gcxA 75 1.71e-11 2dtrA 226 1.00e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.000155 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000160 2qq9A 226 0.01473 1udxA 416 3.230 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2dbyA 368 3.549 2gc7A 386 4.305 b.69.2.1 134954 2oap1 511 4.528 1sc6A 404 5.131 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1uufA 369 6.313 b.35.1.2,c.2.1.1 100006,100007 1im8A 244 6.580 c.66.1.14 66212 1ri5A 298 7.305 c.66.1.34 97502 2j6iA 364 7.392 1h65A 270 7.459 c.37.1.8 65640 2q8xA 331 7.699 2ogeA 399 8.522 1nf2A 268 9.638 c.108.1.10 91849 2gkgA 127 9.852 2fa1A 160 10.45 d.190.1.2 133182 2qm8A 337 11.07 1yp2A 451 11.36 b.81.1.4,c.68.1.6 123798,123799 2vcyA 344 12.08 2a5jA 191 12.24 c.37.1.8 126175 2v3gA 283 12.60 1nrwA 288 12.62 c.108.1.10 86128 1j0hA 588 13.27 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1j48A 110 14.32 b.1.7.1 84112 2yv5A 302 14.41 2ff7A 247 14.52 c.37.1.12 133377 1gppA 237 14.89 b.86.1.2 76262 1fqtA 112 15.77 b.33.1.1 24441 1cqxA 403 16.45 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1eejA 216 16.47 c.47.1.9,d.17.3.1 33057,38071 1p9aG 290 18.12 c.10.2.7 87990 1n0wA 243 18.53 c.37.1.11 79772 1vekA 84 18.86 a.5.2.1 113636 1ry9A 145 20.63 d.198.1.1 98094 1pujA 282 21.11 c.37.1.8 88294 1mb3A 124 21.89 c.23.1.1 78907 2iutA 574 23.18 2bb3A 221 24.04 c.90.1.1 128257 1vplA 256 24.89 c.37.1.12 113966 1e4mM 501 25.10 c.1.8.4 59226 2hjgA 436 25.39 2jbaA 127 26.10 2j69A 695 26.16 1kqfB 294 26.68 d.58.1.5,f.23.22.1 75900,75901 2q48A 166 26.81 d.32.1.9 139829 2bcgY 206 26.90 c.37.1.8 128285 1g8kB 133 26.97 b.33.1.1 24435 1ypfA 336 27.91 2iwrA 178 29.04 1fc6A 388 29.24 b.36.1.3,c.14.1.2 64738,64739 2ooiA 162 29.42 3bh1A 507 29.43 1nrjB 218 29.70 c.37.1.8 86125 1f46A 140 29.91 d.129.4.1 59643 1rhsA 296 30.87 c.46.1.2,c.46.1.2 32703,32704 2p19A 149 30.95 1b00A 127 31.06 c.23.1.1 31122 1x3sA 195 31.15 c.37.1.8 121670 2v3mA 131 32.06 1ksiA 642 32.15 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1wmsA 177 32.24 c.37.1.8 109414 3bfnA 379 32.62 1yzqA 170 33.57 c.37.1.8 124286 1cfbA 205 33.69 b.1.2.1,b.1.2.1 21991,21992 1vicA 262 33.69 c.68.1.13 100756 2it1A 362 36.43 2fjtA 182 37.20 2gf9A 189 37.50 1g6hA 257 37.90 c.37.1.12 60318 2g6bA 180 37.94 c.37.1.8 134701 1st9A 143 38.39 c.47.1.10 98987 1id0A 152 38.58 d.122.1.3 66111 1efpB 252 39.36 c.26.2.3 31636 1dabA 539 39.40 b.80.1.7 28049 1z0jA 170 39.58 c.37.1.8 124319 1jvbA 347 40.59 b.35.1.2,c.2.1.1 77181,77182 1k47A 337 40.62 d.14.1.5,d.58.26.4 72040,72041 1ozhA 566 41.02 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2z7bA 270 41.05 3bk5A 237 41.10 1kmqA 184 42.18 c.37.1.8 84412 4bcl 366 42.32 2aotA 292 42.44 c.66.1.19 127098 1rsgA 516 43.37 2p4zA 284 44.77 1z2aA 168 44.90 c.37.1.8 124374 1z08A 170 45.20 c.37.1.8 124303 2ikkA 173 45.50 2v6oA 596 45.95 2fxqA 264 46.15 3pcgM 238 46.39 b.3.6.1 22742 1ddgA 374 46.41 b.43.4.1,c.25.1.4 25671,31559 1pguA 615 46.64 b.69.4.1,b.69.4.1 88069,88070 1ek0A 170 46.78 c.37.1.8 32076 2i5nH 258 47.06 b.41.1.1,f.23.10.1 137064,137065 2jigA 224 48.33 1f1xA 322 49.42 d.32.1.3,d.32.1.3 83208,83209 2bmeA 186 49.45 c.37.1.8 128790 3cnvA 162 49.45 2fazA 78 49.67 d.15.1.1 133223 1x1rA 178 49.76 c.37.1.8 121595 1l2tA 235 51.25 c.37.1.12 73514 2bmjA 178 53.14 c.37.1.8 128797 1r85A 379 53.71 c.1.8.3 104839 2gj8A 172 55.22 c.37.1.8 135270 2pcjA 224 56.41 2aalA 131 56.88 d.80.1.6 126483 2cn3A 737 57.69 2oggA 152 57.97 2okfA 140 59.75 2g3fA 421 60.45 1r2qA 170 60.78 c.37.1.8 96874 2ap1A 327 61.30 c.55.1.10,c.55.1.10 127108,127109 1lu4A 136 61.77 c.47.1.10 91124 1qorA 327 63.31 b.35.1.2,c.2.1.1 24766,29782 2qwvA 208 63.40 2bbsA 290 63.73 1o6aA 96 64.08 b.139.1.1 92562 2h57A 190 64.18 2fomB 185 64.38 b.47.1.3 133884 2eihA 343 64.56 1i8dA 213 64.64 b.43.4.3,b.43.4.3 61953,61954 1lvmA 229 65.90 b.47.1.3 78243 1zx5A 300 65.94 b.82.1.3 125763 1zkcA 197 66.27 b.62.1.1 125182 2r6zA 258 66.38 2dpyA 438 67.32 1kyqA 274 67.67 c.2.1.11,e.37.1.1 73281,73282 2fssA 365 67.91 2burB 241 68.01 b.3.6.1 129228 2jmwA 86 68.39 2hhiA 204 69.41 2if1A 126 69.42 d.64.1.1 39547 1tt8A 164 69.86 d.190.1.1 112635 2b8wA 328 69.90 1gnlA 544 70.15 e.26.1.1 70287 2qi9C 249 70.43 1h75A 81 70.68 c.47.1.1 60716 1hy7A 173 71.72 d.92.1.11 65957 1ceo 343 72.40 1nlfA 279 72.56 c.37.1.11 85850 2j0vA 212 73.67 2yxoA 267 73.75 1wa3A 205 74.45 c.1.10.1 120802 2d2eA 250 74.48 2py5A 575 74.48 1oxjA 173 75.43 a.60.1.2,a.118.1.13 87517,87518 1rfsA 139 75.60 b.33.1.1 24434 2z26A 347 75.66 2zivA 311 76.78 1mh1 186 77.26 2pmkA 243 79.00 2f91A 237 79.22 b.47.1.2 133150 2pkhA 148 79.88 1z06A 189 80.28 c.37.1.8 124301 2f9lA 199 81.10 c.37.1.8 133166 2b8nA 429 81.16 c.118.1.1 128093 1yueA 427 81.45 2bl9A 238 82.58 1sgwA 214 82.87 c.37.1.12 105541 2bbkH 355 83.24 b.69.2.1 27634 1io2A 213 83.51 c.55.3.1 62612 1k3iA 656 84.93 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1j6wA 175 85.90 d.185.1.2 62663 2z0xA 158 85.99 2f7vA 369 86.31 1puiA 210 86.34 c.37.1.8 88292 2ev1A 222 86.97 1q35A 320 87.86 c.94.1.1 95661 2eenA 183 87.87 1eysH 259 89.49 b.41.1.1,f.23.10.1 25484,43517 1ub0A 258 89.51 c.72.1.2 88394 2q3hA 201 89.52 1qamA 244 89.53 c.66.1.24 34220 1pot 325 89.68 2qh9A 184 89.80