# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 6.02e-13 2gcxA 75 4.51e-12 2dtrA 226 3.13e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 5.19e-05 1fx7A 230 5.75e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.000471 2aotA 292 2.807 c.66.1.19 127098 1rhsA 296 2.824 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.423 2e87A 357 4.289 2dbyA 368 4.625 1ni3A 392 6.297 c.37.1.8,d.15.10.2 80531,80532 1j48A 110 8.416 b.1.7.1 84112 2ogeA 399 10.36 2egxA 269 13.42 1ri5A 298 13.44 c.66.1.34 97502 1vekA 84 15.05 a.5.2.1 113636 1pujA 282 15.24 c.37.1.8 88294 2dejA 350 16.88 2gkgA 127 18.23 2fa1A 160 20.50 d.190.1.2 133182 2aouA 292 21.23 c.66.1.19 127100 1uarA 285 21.59 c.46.1.2,c.46.1.2 107762,107763 1nf2A 268 22.48 c.108.1.10 91849 1o69A 394 23.02 c.67.1.4 92560 1udxA 416 23.42 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1nrwA 288 23.50 c.108.1.10 86128 2bcgY 206 26.05 c.37.1.8 128285 2qm8A 337 26.79 2a5jA 191 27.90 c.37.1.8 126175 2fjtA 182 28.59 2hjgA 436 29.19 1h65A 270 29.74 c.37.1.8 65640 1f5nA 592 30.57 a.114.1.1,c.37.1.8 19077,32152 2v3mA 131 30.97 1wmsA 177 31.49 c.37.1.8 109414 1nrjB 218 32.25 c.37.1.8 86125 2ew1A 201 32.52 c.37.1.8 132446 2ixeA 271 32.53 2ev1A 222 32.90 2p19A 149 33.81 2py6A 409 33.90 1yzqA 170 34.26 c.37.1.8 124286 1k47A 337 34.83 d.14.1.5,d.58.26.4 72040,72041 2aalA 131 34.99 d.80.1.6 126483 1x3sA 195 36.86 c.37.1.8 121670 1fqtA 112 38.03 b.33.1.1 24441 1e0cA 271 39.97 c.46.1.2,c.46.1.2 32717,32718 1g8kB 133 40.17 b.33.1.1 24435 2g29A 417 40.51 2gf9A 189 40.82 2g6bA 180 41.10 c.37.1.8 134701 1ee4A 423 42.05 a.118.1.1 19128 1h75A 81 44.29 c.47.1.1 60716 1tt8A 164 44.72 d.190.1.1 112635 2de0X 526 45.03 1z0jA 170 45.19 c.37.1.8 124319 2c81A 418 45.34 1qg4A 216 46.29 c.37.1.8 32035 2yv5A 302 46.29 1wf3A 301 47.07 c.37.1.8,d.52.3.1 114574,114575 2ff7A 247 47.15 c.37.1.12 133377 2j6iA 364 47.36 1jalA 363 47.37 c.37.1.8,d.15.10.2 84138,84139 1z08A 170 47.38 c.37.1.8 124303 2okfA 140 48.40 1b00A 127 48.87 c.23.1.1 31122 2ffqA 171 48.97 1z2aA 168 49.26 c.37.1.8 124374 2f9lA 199 49.77 c.37.1.8 133166 1gsjA 258 49.99 c.73.1.2 70397 2bmeA 186 50.72 c.37.1.8 128790 1y8xB 98 50.84 2ikkA 173 50.98 2cbzA 237 52.69 1z3eB 73 53.14 a.60.3.1 124401 2jbaA 127 55.36 3cnvA 162 55.50 1l2tA 235 56.85 c.37.1.12 73514 1x1rA 178 57.05 c.37.1.8 121595 1ek0A 170 58.39 c.37.1.8 32076 1kvkA 395 58.86 d.14.1.5,d.58.26.3 73060,73061 1kmqA 184 59.06 c.37.1.8 84412 1eysH 259 60.63 b.41.1.1,f.23.10.1 25484,43517 2h57A 190 63.96 2yvqA 143 64.91 2bbsA 290 65.28 2bmjA 178 66.82 c.37.1.8 128797 2gj8A 172 67.21 c.37.1.8 135270 1rfsA 139 67.67 b.33.1.1 24434 2ob3A 330 67.87 2ftxB 64 68.45 d.300.1.2 134086 2oggA 152 68.59 1cbfA 285 68.72 c.90.1.1 35587 1r2qA 170 70.08 c.37.1.8 96874 2iwrA 178 70.76 1ufwA 95 71.68 d.58.7.1 99358 3ch0A 272 72.85 2bl9A 238 73.43 1wa3A 205 74.43 c.1.10.1 120802 1wwkA 307 74.47 1ve2A 235 75.12 c.90.1.1 120008 2pcjA 224 76.40 1z96A 40 77.11 1vg8A 207 77.62 c.37.1.8 108606 3bn1A 373 80.59 2fh5B 214 80.64 c.37.1.8 133478 1va0A 239 80.84 c.90.1.1 119899 2pi1A 334 81.92 1im8A 244 82.08 c.66.1.14 66212 2qptA 550 82.14 2gxqA 207 82.19 1q0uA 219 82.26 c.37.1.19 95512 2fssA 365 82.28 1zccA 248 82.87 c.1.18.3 124903 1vd6A 224 83.13 c.1.18.3 119991 2acaA 189 83.25 d.63.1.2 126545 2j0vA 212 83.61 1gdhA 320 83.83 c.2.1.4,c.23.12.1 30095,31355 1kpgA 287 85.12 c.66.1.18 68735 2oap1 511 85.69 2cz9A 350 86.40 1mh1 186 86.69 1b0uA 262 87.00 c.37.1.12 32370 2a5dA 175 89.12 c.37.1.8 126172 2imqX 282 89.41 1dxy 333 89.77 1f6bA 198 89.93 c.37.1.8 64986 1z06A 189 89.93 c.37.1.8 124301