# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.28e-12 2gcxA 75 6.37e-12 2dtrA 226 6.44e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 6.30e-05 1fx7A 230 0.000151 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.000727 2e87A 357 5.417 1ri5A 298 7.437 c.66.1.34 97502 1rhsA 296 8.195 c.46.1.2,c.46.1.2 32703,32704 1j48A 110 9.036 b.1.7.1 84112 1rhs 296 9.548 2ogeA 399 9.789 2dbyA 368 10.30 1ni3A 392 10.69 c.37.1.8,d.15.10.2 80531,80532 1vekA 84 15.23 a.5.2.1 113636 2j6iA 364 15.37 2aotA 292 18.28 c.66.1.19 127098 2dejA 350 19.92 2ev1A 222 20.78 1pujA 282 25.05 c.37.1.8 88294 1uarA 285 25.43 c.46.1.2,c.46.1.2 107762,107763 2hjgA 436 25.51 1g8kB 133 28.19 b.33.1.1 24435 1f5nA 592 29.73 a.114.1.1,c.37.1.8 19077,32152 1nrjB 218 30.34 c.37.1.8 86125 1udxA 416 30.56 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2g29A 417 30.60 2py6A 409 33.39 1fqtA 112 35.21 b.33.1.1 24441 2aouA 292 36.52 c.66.1.19 127100 1y8xB 98 37.35 2fssA 365 37.92 1k47A 337 39.84 d.14.1.5,d.58.26.4 72040,72041 2bl9A 238 40.42 1nf2A 268 40.90 c.108.1.10 91849 2imqX 282 41.86 2a5jA 191 42.94 c.37.1.8 126175 1kvkA 395 44.15 d.14.1.5,d.58.26.3 73060,73061 2fa1A 160 45.63 d.190.1.2 133182 1z3eB 73 46.27 a.60.3.1 124401 2qm8A 337 46.98 2aalA 131 47.32 d.80.1.6 126483 2c81A 418 47.44 1h65A 270 47.85 c.37.1.8 65640 1ufwA 95 47.86 d.58.7.1 99358 2uxwA 607 48.93 2v3mA 131 50.16 1o69A 394 52.00 c.67.1.4 92560 2gkgA 127 55.89 1h75A 81 55.92 c.47.1.1 60716 2bcgY 206 57.36 c.37.1.8 128285 1z02A 446 57.88 2fziA 206 59.06 c.71.1.1 134448 1ko6A 187 62.62 b.119.1.1 77471 2fh5B 214 63.84 c.37.1.8 133478 1q0uA 219 65.72 c.37.1.19 95512 2yv5A 302 65.87 2p19A 149 66.28 2oggA 152 67.01 2egxA 269 67.54 1yt8A 539 68.67 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1wmsA 177 68.91 c.37.1.8 109414 1x3sA 195 69.04 c.37.1.8 121670 1qg4A 216 69.53 c.37.1.8 32035 2oap1 511 69.91 2ixeA 271 70.54 1kpgA 287 70.67 c.66.1.18 68735 2cz9A 350 71.02 1im8A 244 72.77 c.66.1.14 66212 2dsjA 423 73.07 3bn1A 373 73.26 1i8dA 213 73.28 b.43.4.3,b.43.4.3 61953,61954 2f9lA 199 74.42 c.37.1.8 133166 1e0cA 271 75.07 c.46.1.2,c.46.1.2 32717,32718 1z2aA 168 75.86 c.37.1.8 124374 2gxqA 207 77.72 2ff7A 247 77.93 c.37.1.12 133377 1b00A 127 78.47 c.23.1.1 31122 1nrwA 288 81.57 c.108.1.10 86128 2g6bA 180 82.30 c.37.1.8 134701 1ee4A 423 84.83 a.118.1.1 19128 1tt8A 164 85.45 d.190.1.1 112635 2cbzA 237 88.41 2jbaA 127 88.46 1z08A 170 88.73 c.37.1.8 124303