# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.59e-11 2gcxA 75 3.92e-11 2dtrA 226 1.22e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000143 1fx7A 230 0.000170 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.001329 2e87A 357 2.842 1ni3A 392 4.528 c.37.1.8,d.15.10.2 80531,80532 2dbyA 368 6.197 1rhsA 296 7.715 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 8.769 2aotA 292 9.819 c.66.1.19 127098 1j48A 110 9.830 b.1.7.1 84112 1pujA 282 13.51 c.37.1.8 88294 2ev1A 222 13.99 2dejA 350 14.58 1vekA 84 15.51 a.5.2.1 113636 1y8xB 98 17.00 1h65A 270 18.63 c.37.1.8 65640 2ogeA 399 19.01 2yv5A 302 20.78 1nrjB 218 22.85 c.37.1.8 86125 1uarA 285 22.96 c.46.1.2,c.46.1.2 107762,107763 1ri5A 298 23.75 c.66.1.34 97502 1udxA 416 27.45 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2bcgY 206 30.54 c.37.1.8 128285 2g29A 417 32.44 1kvkA 395 33.10 d.14.1.5,d.58.26.3 73060,73061 1wmsA 177 33.40 c.37.1.8 109414 2egxA 269 33.54 2a5jA 191 33.58 c.37.1.8 126175 1f5nA 592 34.66 a.114.1.1,c.37.1.8 19077,32152 1z3eB 73 35.03 a.60.3.1 124401 2fjtA 182 35.96 2aalA 131 36.45 d.80.1.6 126483 2j6iA 364 37.22 3bn1A 373 38.01 1nf2A 268 38.81 c.108.1.10 91849 2hjgA 436 39.44 1x3sA 195 39.77 c.37.1.8 121670 1z08A 170 41.50 c.37.1.8 124303 2gj8A 172 42.21 c.37.1.8 135270 2fh5B 214 43.86 c.37.1.8 133478 2g6bA 180 43.87 c.37.1.8 134701 1z2aA 168 44.60 c.37.1.8 124374 2aouA 292 44.86 c.66.1.19 127100 2c81A 418 46.99 2v3mA 131 47.69 1o69A 394 48.17 c.67.1.4 92560 1fqtA 112 48.73 b.33.1.1 24441 1g8kB 133 49.21 b.33.1.1 24435 1h75A 81 49.71 c.47.1.1 60716 1qg4A 216 50.41 c.37.1.8 32035 1t9hA 307 52.36 b.40.4.5,c.37.1.8 112358,112359 1wf3A 301 53.74 c.37.1.8,d.52.3.1 114574,114575 2fa1A 160 53.96 d.190.1.2 133182 2f9lA 199 53.98 c.37.1.8 133166 1z0jA 170 54.77 c.37.1.8 124319 1yzqA 170 55.51 c.37.1.8 124286 1wwkA 307 55.81 1vg8A 207 56.79 c.37.1.8 108606 2ew1A 201 56.94 c.37.1.8 132446 1jalA 363 57.43 c.37.1.8,d.15.10.2 84138,84139 2py6A 409 57.46 2q3hA 201 59.12 1nrwA 288 59.18 c.108.1.10 86128 2qu8A 228 59.50 2ixeA 271 63.46 1ek0A 170 64.60 c.37.1.8 32076 2fssA 365 64.81 1e0cA 271 65.01 c.46.1.2,c.46.1.2 32717,32718 2h57A 190 65.35 1r2qA 170 67.84 c.37.1.8 96874 2cz9A 350 68.71 2p19A 149 69.34 2h17A 181 70.83 1kmqA 184 72.65 c.37.1.8 84412 2qptA 550 73.91 2ftxB 64 74.71 d.300.1.2 134086 1l2tA 235 75.30 c.37.1.12 73514 1puiA 210 75.66 c.37.1.8 88292 2ff7A 247 76.56 c.37.1.12 133377 1x1rA 178 77.31 c.37.1.8 121595 1ee4A 423 77.77 a.118.1.1 19128 1gutA 68 78.03 b.40.6.1 65576 2dbqA 334 78.14 3cnvA 162 78.55 2gxqA 207 78.58 1z02A 446 79.28 1gsjA 258 80.14 c.73.1.2 70397 1dv0A 47 81.29 a.5.2.1 16289 2oggA 152 81.52 2j0vA 212 83.24 2bmeA 186 84.32 c.37.1.8 128790 2bmjA 178 84.81 c.37.1.8 128797 2oap1 511 85.60 1im8A 244 85.89 c.66.1.14 66212 1f6bA 198 86.69 c.37.1.8 64986 2v8pA 271 86.82 2ffqA 171 87.12 2acaA 189 87.64 d.63.1.2 126545 2gkgA 127 89.45 1kpgA 287 89.52 c.66.1.18 68735