# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.43e-11 2gcxA 75 3.60e-11 2dtrA 226 1.41e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 8.30e-05 1fx7A 230 0.000214 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.001115 2e87A 357 3.667 1rhsA 296 5.008 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 5.654 2dbyA 368 7.583 1ni3A 392 7.619 c.37.1.8,d.15.10.2 80531,80532 1j48A 110 8.309 b.1.7.1 84112 1ri5A 298 11.06 c.66.1.34 97502 1y8xB 98 18.33 2ogeA 399 19.16 1pujA 282 19.22 c.37.1.8 88294 1vekA 84 19.23 a.5.2.1 113636 2bcgY 206 21.54 c.37.1.8 128285 2a5jA 191 23.35 c.37.1.8 126175 1uarA 285 23.90 c.46.1.2,c.46.1.2 107762,107763 2ff7A 247 24.12 c.37.1.12 133377 2fh5B 214 25.70 c.37.1.8 133478 2ev1A 222 25.75 1kvkA 395 26.07 d.14.1.5,d.58.26.3 73060,73061 1nrjB 218 26.66 c.37.1.8 86125 1h65A 270 26.78 c.37.1.8 65640 2ixeA 271 27.68 2j6iA 364 28.53 2yv5A 302 29.30 2hjgA 436 31.44 1x3sA 195 31.62 c.37.1.8 121670 2py6A 409 31.81 2aotA 292 32.54 c.66.1.19 127098 2g29A 417 33.18 2g6bA 180 34.09 c.37.1.8 134701 1nf2A 268 34.66 c.108.1.10 91849 1wmsA 177 35.83 c.37.1.8 109414 1im8A 244 35.95 c.66.1.14 66212 2dejA 350 36.32 2fa1A 160 36.91 d.190.1.2 133182 2gj8A 172 36.92 c.37.1.8 135270 1fqtA 112 37.96 b.33.1.1 24441 2p19A 149 38.19 1i8dA 213 39.43 b.43.4.3,b.43.4.3 61953,61954 1yzqA 170 39.52 c.37.1.8 124286 2f9lA 199 39.79 c.37.1.8 133166 1z0jA 170 39.92 c.37.1.8 124319 1z2aA 168 40.74 c.37.1.8 124374 1o69A 394 41.63 c.67.1.4 92560 1f5nA 592 42.04 a.114.1.1,c.37.1.8 19077,32152 2aouA 292 43.24 c.66.1.19 127100 1z3eB 73 43.33 a.60.3.1 124401 2qm8A 337 43.45 2pmkA 243 43.84 1z08A 170 44.00 c.37.1.8 124303 1vg8A 207 45.72 c.37.1.8 108606 1e0cA 271 45.90 c.46.1.2,c.46.1.2 32717,32718 1b0uA 262 46.18 c.37.1.12 32370 2zbvA 263 47.00 2gf9A 189 47.01 1ek0A 170 47.27 c.37.1.8 32076 2ffqA 171 47.29 1dxy 333 47.36 1x1rA 178 47.87 c.37.1.8 121595 2cbzA 237 49.74 1g8kB 133 49.89 b.33.1.1 24435 1l2tA 235 50.35 c.37.1.12 73514 2fjtA 182 50.77 2v3mA 131 51.02 2ew1A 201 51.49 c.37.1.8 132446 1zccA 248 51.56 c.1.18.3 124903 2zgwA 235 52.03 2oggA 152 52.97 3bn1A 373 53.26 1h75A 81 53.87 c.47.1.1 60716 1g6hA 257 53.89 c.37.1.12 60318 2bmeA 186 57.08 c.37.1.8 128790 2de0X 526 57.09 1q0uA 219 57.17 c.37.1.19 95512 2fssA 365 57.23 1r2qA 170 57.24 c.37.1.8 96874 2a5dA 175 58.02 c.37.1.8 126172 2pcjA 224 59.46 2h57A 190 60.15 2bl9A 238 60.35 2imqX 282 61.45 2h17A 181 61.80 1ee4A 423 62.51 a.118.1.1 19128 2aalA 131 62.83 d.80.1.6 126483 2ikkA 173 63.64 2bbsA 290 64.18 1z02A 446 64.21 2egxA 269 64.24 1t9hA 307 65.39 b.40.4.5,c.37.1.8 112358,112359 2gxqA 207 65.46 1qg4A 216 66.26 c.37.1.8 32035 1udxA 416 67.51 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2gkgA 127 68.09 3ch0A 272 68.13 1gsjA 258 69.60 c.73.1.2 70397 1wwkA 307 69.62 2qu8A 228 70.31 3cnvA 162 70.72 2iwrA 178 71.98 1r1gA 31 72.10 g.3.7.2 96816 1vplA 256 72.21 c.37.1.12 113966 1dv0A 47 72.71 a.5.2.1 16289 2j0vA 212 73.09 1nrwA 288 73.13 c.108.1.10 86128 1gdhA 320 74.17 c.2.1.4,c.23.12.1 30095,31355 1kpgA 287 75.16 c.66.1.18 68735 1k47A 337 75.21 d.14.1.5,d.58.26.4 72040,72041 2q3hA 201 75.26 1aoeA 192 75.53 c.71.1.1 34923 1vd6A 224 76.12 c.1.18.3 119991 1wf3A 301 77.24 c.37.1.8,d.52.3.1 114574,114575 2c81A 418 77.43 1z47A 355 77.55 2d2eA 250 78.08 1ji0A 240 79.18 c.37.1.12 71665 1mr3F 181 79.21 c.37.1.8 79422 2bmjA 178 79.58 c.37.1.8 128797 2okfA 140 81.28 2oogA 287 81.58 1dxyA 333 82.13 c.2.1.4,c.23.12.1 30094,31354 1rfsA 139 82.51 b.33.1.1 24434 2cukA 311 83.29 1qdeA 224 84.41 c.37.1.19 32410 1eluA 390 84.69 c.67.1.3 34434 1gutA 68 85.62 b.40.6.1 65576 1z06A 189 86.90 c.37.1.8 124301 1kmqA 184 88.55 c.37.1.8 84412 2ce2X 166 88.71 1rwzA 245 89.63 d.131.1.2,d.131.1.2 98005,98006