# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 5.56e-13 2gcxA 75 1.51e-12 2dtrA 226 1.14e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 5.25e-05 2qq9A 226 0.000532 1fx7A 230 0.001525 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1j48A 110 4.979 b.1.7.1 84112 1pujA 282 5.522 c.37.1.8 88294 1rhsA 296 5.601 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 8.227 1mkyA 439 10.25 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1wmsA 177 11.50 c.37.1.8 109414 1ni3A 392 11.69 c.37.1.8,d.15.10.2 80531,80532 2dbyA 368 12.73 1kb9D 246 13.72 a.3.1.3,f.23.11.1 77317,77318 1qg4A 216 15.38 c.37.1.8 32035 2a5jA 191 17.29 c.37.1.8 126175 1f6bA 198 18.97 c.37.1.8 64986 2cxxA 190 19.55 c.37.1.8 131013 1bif 469 21.18 1kmqA 184 22.36 c.37.1.8 84412 1ff9A 450 22.44 c.2.1.3,d.81.1.2 30039,39954 2de0X 526 24.42 2gf9A 189 27.46 1k47A 337 27.77 d.14.1.5,d.58.26.4 72040,72041 1mr3F 181 27.85 c.37.1.8 79422 2hjgA 436 28.09 1g8kB 133 29.50 b.33.1.1 24435 1rfsA 139 32.17 b.33.1.1 24434 2egxA 269 33.46 1qvcA 145 33.82 b.40.4.3 25284 2dvzA 314 34.65 2dejA 350 35.06 1sviA 195 35.12 c.37.1.8 106048 1x3sA 195 35.25 c.37.1.8 121670 1ufwA 95 35.41 d.58.7.1 99358 1wisA 124 35.86 b.1.2.1 120975 2j0vA 212 36.07 2gxqA 207 36.10 2a5dA 175 36.72 c.37.1.8 126172 1puiA 210 37.91 c.37.1.8 88292 1z08A 170 37.99 c.37.1.8 124303 2ew1A 201 38.08 c.37.1.8 132446 2g6bA 180 38.37 c.37.1.8 134701 2f9lA 199 39.04 c.37.1.8 133166 2ff7A 247 40.15 c.37.1.12 133377 2f5xA 312 40.45 1nrjB 218 40.46 c.37.1.8 86125 1x1rA 178 41.77 c.37.1.8 121595 1yzqA 170 42.20 c.37.1.8 124286 2bcgY 206 42.85 c.37.1.8 128285 2qpqA 301 43.40 2bmeA 186 45.34 c.37.1.8 128790 2pmkA 243 47.41 2b3nA 159 48.46 d.38.1.4 127792 1q0uA 219 49.42 c.37.1.19 95512 2bmjA 178 49.75 c.37.1.8 128797 2v3mA 131 51.08 2h17A 181 52.35 2aotA 292 53.45 c.66.1.19 127098 1z2aA 168 53.67 c.37.1.8 124374 1jalA 363 53.73 c.37.1.8,d.15.10.2 84138,84139 1nf3A 195 55.82 c.37.1.8 85594 1ek0A 170 56.58 c.37.1.8 32076 1zj6A 187 57.17 c.37.1.8 125145 1z0jA 170 58.65 c.37.1.8 124319 1is1A 185 59.42 d.67.3.1 83704 1iseA 185 59.43 d.67.3.1 90691 2iwrA 178 59.51 2o55A 258 59.56 1qdeA 224 61.09 c.37.1.19 32410 1zccA 248 61.23 c.1.18.3 124903 1uc2A 481 61.34 d.261.1.1 99161 1ctqA 166 62.26 c.37.1.8 31965 1h65A 270 63.01 c.37.1.8 65640 1mh1 186 63.48 2cbzA 237 64.84 2gukA 120 65.87 2q3hA 201 66.42 1wrbA 253 68.00 c.37.1.19 121192 2e3bA 344 69.62 a.93.1.1 132024 2qvpA 275 70.88 2ffqA 171 72.00 2gcoA 201 72.42 2fh5B 214 72.91 c.37.1.8 133478 1uarA 285 73.43 c.46.1.2,c.46.1.2 107762,107763 3b34A 891 74.79 1fqtA 112 77.78 b.33.1.1 24441 2gj8A 172 78.48 c.37.1.8 135270 3berA 249 79.61 1zd9A 188 80.33 c.37.1.8 124938 1xtqA 177 81.87 c.37.1.8 122297 1tt8A 164 83.98 d.190.1.1 112635 1gkmA 509 84.12 a.127.1.2 70228 2ce2X 166 84.42 2fkiA 126 84.55 d.198.3.1 133657 1lla 628 84.70 1xexB 172 85.09 2e74D 179 85.53 b.33.1.1,f.23.12.1 132049,132050 1yi9A 309 85.70 b.121.1.2,b.121.1.2 123276,123277