# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	3.15e-10		
2gcxA	75	6.10e-10		
2dtrA	226	7.47e-05	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.000513		
1fx7A	230	0.002230	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.01649		
1rhsA	296	7.024	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	7.647		
1ri5A	298	8.106	c.66.1.34	97502
2aotA	292	8.459	c.66.1.19	127098
1j48A	110	11.85	b.1.7.1	84112
1pujA	282	20.33	c.37.1.8	88294
2aouA	292	23.80	c.66.1.19	127100
1uarA	285	27.87	c.46.1.2,c.46.1.2	107762,107763
2a5jA	191	32.09	c.37.1.8	126175
1y8xB	98	35.38		
1h65A	270	36.61	c.37.1.8	65640
1wmsA	177	37.14	c.37.1.8	109414
1x1rA	178	38.50	c.37.1.8	121595
1qg4A	216	45.52	c.37.1.8	32035
1kmqA	184	46.09	c.37.1.8	84412
1nrjB	218	46.91	c.37.1.8	86125
2b8wA	328	47.04		
1ni3A	392	47.88	c.37.1.8,d.15.10.2	80531,80532
2dbyA	368	48.97		
1vl5A	260	49.33	c.66.1.41	108720
2v3mA	131	49.91		
1vekA	84	50.49	a.5.2.1	113636
2ew1A	201	51.11	c.37.1.8	132446
1e0cA	271	51.69	c.46.1.2,c.46.1.2	32717,32718
2iwrA	178	53.05		
1kvkA	395	54.33	d.14.1.5,d.58.26.3	73060,73061
2j0vA	212	55.66		
1zccA	248	55.71	c.1.18.3	124903
1z2aA	168	56.24	c.37.1.8	124374
1z0jA	170	57.42	c.37.1.8	124319
2f9lA	199	60.38	c.37.1.8	133166
1xtqA	177	60.93	c.37.1.8	122297
1x3sA	195	61.99	c.37.1.8	121670
2bcgY	206	64.44	c.37.1.8	128285
2dejA	350	65.52		
1yzqA	170	67.26	c.37.1.8	124286
2imqX	282	67.68		
2bmjA	178	67.77	c.37.1.8	128797
1np3A	338	69.16	a.100.1.2,c.2.1.6	85946,85947
2bmeA	186	69.38	c.37.1.8	128790
2ogeA	399	72.96		
2if1A	126	76.04	d.64.1.1	39547
2j6iA	364	76.62		
1z06A	189	76.76	c.37.1.8	124301
1kaoA	167	77.85	c.37.1.8	32014
2gf9A	189	77.93		
1vd6A	224	78.18	c.1.18.3	119991
1mr3F	181	80.47	c.37.1.8	79422
1nf3A	195	81.60	c.37.1.8	85594
1jalA	363	84.96	c.37.1.8,d.15.10.2	84138,84139
1nf2A	268	86.36	c.108.1.10	91849
2fa1A	160	87.27	d.190.1.2	133182
3cjpA	272	87.70		
1mh1	186	87.98