# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 1.60e-06 2h3jA 75 3.43e-06 1fx7A 230 0.02411 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 2.258 1ybyA 215 2.499 2oggA 152 2.842 1qcsA 211 3.322 b.52.2.3,d.31.1.1 26927,38461 1suuA 312 3.988 b.68.10.1 99006 1h9mA 145 5.211 b.40.6.2,b.40.6.2 60833,60834 2qq9A 226 5.582 2glwA 92 6.922 1j48A 110 7.015 b.1.7.1 84112 1h75A 81 7.240 c.47.1.1 60716 1zvtA 256 7.730 1noaA 113 8.154 b.1.7.1 22208 1rhsA 296 9.118 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 9.153 1rqpA 299 10.89 b.141.1.1,c.132.1.1 97754,97755 1uarA 285 10.89 c.46.1.2,c.46.1.2 107762,107763 2fa1A 160 12.06 d.190.1.2 133182 1ng2A 193 12.12 b.34.2.1,b.34.2.1 85660,85661 1fdrA 248 12.63 b.43.4.2,c.25.1.1 25653,31543 1bbzA 58 13.24 b.34.2.1 24477 1fdr 248 14.54 1bkb 136 14.69 1iz6A 138 14.70 b.34.5.2,b.40.4.5 76976,76977 3cnvA 162 15.08 1phtA 85 15.49 b.34.2.1 24483 2elfA 370 17.24 1x54A 434 18.86 1wlfA 179 19.78 d.31.1.1,b.52.2.3 109396,109397 1uebA 184 20.87 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1bkbA 136 21.17 b.34.5.2,b.40.4.5 24609,25341 1wyxA 69 21.35 1zi0A 307 21.63 1pht 85 22.21 2drmA 58 22.86 1gcqA 61 23.31 b.34.2.1 60434 1wp5A 323 24.13 b.68.10.1 114780 2zbvA 263 25.18 2o88A 58 26.73 2mcmA 112 26.92 b.1.7.1 22207 2gu1A 361 27.48 2qt6A 498 27.87 1rwzA 245 28.06 d.131.1.2,d.131.1.2 98005,98006 1w70A 60 28.15 1zlmA 58 28.15 1k82A 268 28.45 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1ollA 188 28.81 b.1.1.4,b.1.1.4 93313,93314 1w6sA 599 29.14 b.70.1.1 114284 2mcm 112 30.11 1utiA 58 31.52 b.34.2.1 99962 2oq0A 206 34.87 1npyA 271 35.57 c.2.1.7,c.58.1.5 85995,85996 1hh2P 344 36.23 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 3cp0A 82 36.29 1gvhA 396 36.35 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1umkA 275 37.50 b.43.4.2,c.25.1.1 113312,113313 3c0cA 73 38.50 2gpjA 252 40.25 1dj7B 75 40.34 b.34.4.3 24598 1v7lA 163 40.53 c.8.2.1 113562 2ooiA 162 40.69 1cr5A 189 40.99 b.52.2.3,d.31.1.1 26931,38465 2jdiD 482 41.47 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 2a08A 60 41.53 2eveA 157 41.95 b.122.1.8 132427 1yrtA 364 42.37 1ep3B 262 42.44 b.43.4.2,c.25.1.3 25664,31554 2asbA 251 43.08 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1zx6A 58 43.10 1eejA 216 43.80 c.47.1.9,d.17.3.1 33057,38071 1io1A 398 44.52 e.32.1.1 62611 2pkhA 148 44.56 1nkr 201 45.19 1ootA 60 46.14 b.34.2.1 93386 1hd3A 62 47.16 b.34.2.1 65802 2fb9A 322 47.81 2brjA 188 49.62 3tssA 194 51.86 b.40.2.2,d.15.6.1 25160,37749 2ckkA 127 51.88 1u06A 62 53.26 b.34.2.1 119404 1e0cA 271 55.17 c.46.1.2,c.46.1.2 32717,32718 2egvA 229 55.86 2bi7A 384 55.91 1se8A 301 55.92 b.40.4.3 105448 1t2wA 145 56.40 b.100.1.1 106289 2qn6A 414 57.90 2ar1A 172 57.96 b.122.1.8 127187 2eifA 136 58.34 b.34.5.2,b.40.4.5 24607,25339 2j6fA 62 58.82 1eaxA 241 59.03 b.47.1.2 64889 1gycA 499 59.90 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1krhA 338 61.37 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2pjhB 193 61.86 1l0wA 580 63.22 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2dyiA 162 65.77 1zceA 155 67.08 b.122.1.8 124907 1qx4A 274 67.23 b.43.4.2,c.25.1.1 104624,104625 2p19A 149 67.98 1vf1A 229 72.81 2gncA 60 73.47 1whi 122 76.96 2yweA 600 77.12 2eo0A 147 77.15 2vidA 204 78.32 2r2oA 138 78.69 1jbwA 428 78.70 c.59.1.2,c.72.2.2 62860,62861 1gy7A 125 80.37 d.17.4.2 70738 1xe1A 116 81.08 b.43.3.1 109571 1h8eA 510 84.49 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2pu9B 74 85.12 2h5uA 499 89.28 1kcfA 258 89.51 a.140.2.1,c.55.3.7 68434,68435