# List of top-scoring protein chains for T0462.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.40e-06		
2gcxA	75	9.55e-06		
1fx7A	230	0.2744	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dykA	161	13.97		
1j6oA	268	21.86	c.1.9.12	77088
2ev1A	222	23.55		
1qvpA	87	33.55	b.34.1.2	111659
1bymA	97	34.77	b.34.1.2	24458
2hjgA	436	35.21		
1qw1A	121	36.76		
1y8xB	98	36.97		
1g3tA	226	44.03	a.4.5.24,a.76.1.1,b.34.1.2	65127,65128,65129
1fwzA	226	45.18	a.4.5.24,a.76.1.1,b.34.1.2	60077,60078,60079
2qq9A	226	45.27		
2qqaA	226	45.42		
2tdxA	226	45.42	a.4.5.24,a.76.1.1	16201,18407
2qqbA	226	45.47		
1p92A	226	45.57	a.4.5.24,a.76.1.1,b.34.1.2	104085,104086,104087
1c0wA	225	45.70	a.4.5.24,a.76.1.1,b.34.1.2	16211,18417,24455
2uzpA	144	45.75		
2dtrA	226	45.76	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1g3yA	226	45.86	a.4.5.24,a.76.1.1,b.34.1.2	65136,65137,65138
2ekkA	47	49.07		
2z83A	459	55.31		
1y10A	407	62.02		
2ohfA	396	62.37		
2inbA	140	67.89		
1nb5I	98	73.41	d.17.1.2	80381
1e0cA	271	74.48	c.46.1.2,c.46.1.2	32717,32718
1gd4A	98	74.81	d.17.1.2	60438
2ogeA	399	75.64		
1cyuA	98	76.65	d.17.1.2	38004
1egaA	301	87.26	c.37.1.8,d.52.3.1	32150,38836
2eggA	297	88.82