# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 7.51e-12 2gcxA 75 1.47e-11 1fx7A 230 3.07e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 1.36e-05 2dtrA 226 2.88e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000932 2dtr 226 0.004641 1bymA 97 0.1381 b.34.1.2 24458 1rhs 296 4.379 2cxxA 190 4.525 c.37.1.8 131013 1pujA 282 4.762 c.37.1.8 88294 2dbyA 368 5.475 1ni3A 392 7.395 c.37.1.8,d.15.10.2 80531,80532 2qptA 550 7.888 1wf3A 301 8.287 c.37.1.8,d.52.3.1 114574,114575 1h75A 81 8.332 c.47.1.1 60716 1uarA 285 8.711 c.46.1.2,c.46.1.2 107762,107763 1rhsA 296 8.782 c.46.1.2,c.46.1.2 32703,32704 1z2mA 155 9.681 d.15.1.1,d.15.1.1 124387,124388 2nq2C 253 10.05 1udxA 416 10.87 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2bb3A 221 11.03 c.90.1.1 128257 2dejA 350 12.31 1z47A 355 13.19 1mdoA 393 13.61 c.67.1.4 79013 1e0cA 271 14.61 c.46.1.2,c.46.1.2 32717,32718 2fa1A 160 16.97 d.190.1.2 133182 2gj8A 172 20.12 c.37.1.8 135270 1l2tA 235 24.95 c.37.1.12 73514 3cnvA 162 26.12 1o69A 394 27.67 c.67.1.4 92560 1xkqA 280 28.33 c.2.1.2 115417 1vplA 256 29.66 c.37.1.12 113966 1cbfA 285 29.91 c.90.1.1 35587 2azpA 318 30.35 2c81A 418 31.33 1lnzA 342 31.37 b.117.1.1,c.37.1.8 78112,78113 2e87A 357 31.83 2qu8A 228 32.58 2pkhA 148 33.36 1y8xB 98 34.57 2egxA 269 34.74 1ne2A 200 34.78 c.66.1.32 85586 1uuzA 137 35.81 d.233.1.1 100024 1b9hA 388 35.95 c.67.1.4 34488 2ikkA 173 36.68 1s68A 249 36.75 d.142.2.4 98591 2yv5A 302 36.98 2qwvA 208 39.47 1sviA 195 39.66 c.37.1.8 106048 2ev1A 222 41.30 1elqA 390 42.31 c.67.1.3 34436 1va0A 239 42.66 c.90.1.1 119899 1vekA 84 42.96 a.5.2.1 113636 2h1rA 299 43.51 2qi9C 249 44.15 1xhlA 297 44.26 c.2.1.2 109591 1qusA 322 44.46 d.2.1.6 36991 2gaiA 633 45.23 2py6A 409 46.76 1b0uA 262 47.45 c.37.1.12 32370 1o6yA 299 48.76 d.144.1.7 81106 1k47A 337 50.04 d.14.1.5,d.58.26.4 72040,72041 2oggA 152 50.69 1z3eB 73 50.69 a.60.3.1 124401 1jj2S 119 53.07 b.34.5.1 63104 1xwsA 313 54.31 d.144.1.7 116133 1sgwA 214 55.63 c.37.1.12 105541 1mq4A 272 57.84 d.144.1.7 91391 1vkjA 285 57.98 c.37.1.5 108666 1pbeA 394 59.06 c.3.1.2,d.16.1.2 30338,37869 1gsa 316 59.31 1qamA 244 60.60 c.66.1.24 34220 3bn1A 373 60.66 2it1A 362 62.05 2yvqA 143 62.10 2z6rA 265 62.27 1eluA 390 62.56 c.67.1.3 34434 1sfxA 109 65.15 a.4.5.50 105505 1z02A 446 66.23 2eenA 183 66.52 2vozA 346 67.80 1hrkA 359 68.86 c.92.1.1 61228 1t9hA 307 69.35 b.40.4.5,c.37.1.8 112358,112359 1g291 372 70.27 2ooiA 162 70.92 1ji0A 240 71.24 c.37.1.12 71665 3bwgA 239 71.79 2ccqA 99 72.88 d.314.1.1 130252 2uvkA 357 74.14 2j85A 122 74.64 d.321.1.1 138133 2ejwA 332 74.68 2fziA 206 74.88 c.71.1.1 134448 2acaA 189 76.27 d.63.1.2 126545 1y8qB 640 76.40 1zc1A 208 77.24 1pjqA 457 77.46 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1l6wA 220 78.96 c.1.10.1 73632 2pwyA 258 80.10 2zbvA 263 81.81 1egaA 301 81.92 c.37.1.8,d.52.3.1 32150,38836 2p19A 149 82.56 2nwiA 172 82.96 2okfA 140 83.95 2ftxB 64 85.83 d.300.1.2 134086 1puiA 210 86.15 c.37.1.8 88292 2qh8A 302 88.24 1r1gA 31 89.21 g.3.7.2 96816