# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.01e-12 2gcxA 75 4.78e-12 1fx7A 230 1.61e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 1.07e-05 2dtrA 226 1.65e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000219 1qw1A 121 0.002937 1bymA 97 0.02080 b.34.1.2 24458 1ni3A 392 2.972 c.37.1.8,d.15.10.2 80531,80532 1rhs 296 3.049 1uarA 285 3.740 c.46.1.2,c.46.1.2 107762,107763 2qptA 550 5.344 2cxxA 190 5.432 c.37.1.8 131013 1rhsA 296 6.167 c.46.1.2,c.46.1.2 32703,32704 1wf3A 301 6.536 c.37.1.8,d.52.3.1 114574,114575 1pujA 282 6.623 c.37.1.8 88294 1h75A 81 6.764 c.47.1.1 60716 2nq2C 253 7.084 1e0cA 271 8.057 c.46.1.2,c.46.1.2 32717,32718 1udxA 416 8.853 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1mdoA 393 9.165 c.67.1.4 79013 1z47A 355 9.279 2dbyA 368 12.37 1l2tA 235 12.74 c.37.1.12 73514 2bb3A 221 14.18 c.90.1.1 128257 2dejA 350 16.28 1xkqA 280 17.52 c.2.1.2 115417 2c81A 418 18.56 1z2mA 155 19.75 d.15.1.1,d.15.1.1 124387,124388 1b9hA 388 20.46 c.67.1.4 34488 1ne2A 200 21.26 c.66.1.32 85586 1lnzA 342 23.13 b.117.1.1,c.37.1.8 78112,78113 1vplA 256 24.01 c.37.1.12 113966 2fa1A 160 24.98 d.190.1.2 133182 2e87A 357 25.49 1o69A 394 25.68 c.67.1.4 92560 2qu8A 228 26.05 1xhlA 297 26.65 c.2.1.2 109591 2qi9C 249 26.95 3bn1A 373 27.34 2pkhA 148 28.82 1elqA 390 28.98 c.67.1.3 34436 2gj8A 172 29.00 c.37.1.8 135270 1vkjA 285 31.37 c.37.1.5 108666 1eluA 390 35.07 c.67.1.3 34434 2yv5A 302 36.14 1y8xB 98 36.34 1sviA 195 36.97 c.37.1.8 106048 2py6A 409 37.09 2uvkA 357 37.22 1cbfA 285 37.94 c.90.1.1 35587 1wohA 305 38.20 c.42.1.1 109446 2ev1A 222 38.69 2fziA 206 38.82 c.71.1.1 134448 2gaiA 633 39.04 3cnvA 162 40.25 1yt8A 539 40.85 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1ym5A 300 41.60 2ejwA 332 41.95 2it1A 362 42.31 2h1rA 299 42.67 1l6wA 220 43.41 c.1.10.1 73632 1x8mA 288 44.25 b.82.1.13 109516 2oggA 152 45.69 2qwvA 208 46.33 1sgwA 214 46.91 c.37.1.12 105541 1vekA 84 47.42 a.5.2.1 113636 2z6rA 265 47.60 2ikkA 173 48.27 1b0uA 262 49.94 c.37.1.12 32370 2ogeA 399 51.22 2ooiA 162 51.90 1va0A 239 52.00 c.90.1.1 119899 2yvtA 260 53.89 1hfc 169 53.99 2pwyA 258 54.91 1zccA 248 55.23 c.1.18.3 124903 2yvlA 248 55.82 1ji0A 240 57.48 c.37.1.12 71665 1mq4A 272 57.64 d.144.1.7 91391 1y8qB 640 58.40 2p19A 149 58.94 1yrlA 491 59.63 2azpA 318 61.35 1g291 372 63.05 1qamA 244 63.51 c.66.1.24 34220 1z3eB 73 63.52 a.60.3.1 124401 1xwsA 313 64.61 d.144.1.7 116133 1t9hA 307 65.26 b.40.4.5,c.37.1.8 112358,112359 2yqzA 263 65.58 1r1gA 31 66.44 g.3.7.2 96816 2b8wA 328 66.53 1s68A 249 66.60 d.142.2.4 98591 1hrkA 359 69.17 c.92.1.1 61228 1v5tA 90 70.34 d.15.1.1 108385 1puiA 210 71.17 c.37.1.8 88292 2yvqA 143 72.15 1z02A 446 72.18 3bwgA 239 74.98 2ixeA 271 75.07 1uuzA 137 75.85 d.233.1.1 100024 1egaA 301 76.24 c.37.1.8,d.52.3.1 32150,38836 1o6yA 299 76.56 d.144.1.7 81106 1oxxK 353 78.05 b.40.6.3,c.37.1.12 93715,93716 2zbvA 263 79.41 2egxA 269 80.71 2j6iA 364 82.36 1oxsC 353 82.67 b.40.6.3,c.37.1.12 87519,87520 2o55A 258 84.63 1vg5A 73 87.86 a.5.2.1 113640 1npyA 271 89.42 c.2.1.7,c.58.1.5 85995,85996