# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 1.02e-13 2h3jA 75 1.31e-13 1fx7A 230 1.02e-07 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 2.70e-06 2dtrA 226 9.12e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000122 2dtr 226 0.002888 1bymA 97 0.01543 b.34.1.2 24458 1wf3A 301 0.5677 c.37.1.8,d.52.3.1 114574,114575 1mdoA 393 0.9756 c.67.1.4 79013 1z2mA 155 1.126 d.15.1.1,d.15.1.1 124387,124388 1uarA 285 1.149 c.46.1.2,c.46.1.2 107762,107763 1rhs 296 1.347 1l2tA 235 1.624 c.37.1.12 73514 1z47A 355 1.819 2gj8A 172 1.819 c.37.1.8 135270 1pujA 282 2.166 c.37.1.8 88294 2c81A 418 2.359 2nq2C 253 2.504 1o69A 394 2.732 c.67.1.4 92560 3bn1A 373 2.850 1rhsA 296 2.901 c.46.1.2,c.46.1.2 32703,32704 1b9hA 388 3.051 c.67.1.4 34488 1egaA 301 3.190 c.37.1.8,d.52.3.1 32150,38836 2yv5A 302 3.452 1e0cA 271 3.610 c.46.1.2,c.46.1.2 32717,32718 2cxxA 190 3.637 c.37.1.8 131013 1sgwA 214 3.922 c.37.1.12 105541 1ni3A 392 4.259 c.37.1.8,d.15.10.2 80531,80532 2dbyA 368 4.464 1vplA 256 4.518 c.37.1.12 113966 1h75A 81 4.558 c.47.1.1 60716 2qi9C 249 4.729 2qptA 550 5.246 2it1A 362 5.287 1ji0A 240 5.830 c.37.1.12 71665 1b0uA 262 6.388 c.37.1.12 32370 1t9hA 307 6.548 b.40.4.5,c.37.1.8 112358,112359 2pjzA 263 6.615 1udxA 416 6.700 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2ogeA 399 6.774 1zc1A 208 7.300 1yrlA 491 8.051 2okfA 140 8.140 2fa1A 160 8.441 d.190.1.2 133182 1oxsC 353 8.889 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 8.954 b.40.6.3,c.37.1.12 93715,93716 2e87A 357 9.003 1sviA 195 9.015 c.37.1.8 106048 1g291 372 9.937 1h65A 270 10.06 c.37.1.8 65640 1y8xB 98 10.94 1ne2A 200 11.15 c.66.1.32 85586 3cnvA 162 11.15 1g6hA 257 11.87 c.37.1.12 60318 1vekA 84 12.27 a.5.2.1 113636 1elqA 390 12.40 c.67.1.3 34436 2qu8A 228 12.58 2o55A 258 13.27 2egxA 269 14.51 1eluA 390 14.55 c.67.1.3 34434 1xkqA 280 15.31 c.2.1.2 115417 1v5tA 90 16.03 d.15.1.1 108385 2azpA 318 16.25 2nygA 273 17.06 2ixeA 271 17.13 1hrkA 359 18.65 c.92.1.1 61228 2ikkA 173 19.43 1lb2B 84 19.99 a.60.3.1 77871 2ev1A 222 20.34 2ooiA 162 20.41 2zbvA 263 21.22 2qh8A 302 21.29 2ff7A 247 21.48 c.37.1.12 133377 2inbA 140 22.15 2p19A 149 22.75 3bwgA 239 22.75 2pmkA 243 23.07 1opdA 85 23.33 d.94.1.1 40560 1fqtA 112 23.66 b.33.1.1 24441 1yemA 179 23.97 d.63.1.2 116646 2yvlA 248 24.04 1ydgA 211 24.83 c.23.5.8 116614 2fjtA 182 25.18 1nrvA 105 26.13 d.93.1.1 86126 1fr3A 67 26.15 b.40.6.1 25436 1pchA 88 26.51 d.94.1.1 40564 1o6aA 96 26.60 b.139.1.1 92562 1ptfA 88 27.08 d.94.1.1 40549 1xhlA 297 27.14 c.2.1.2 109591 2gaiA 633 27.22 1vg5A 73 27.74 a.5.2.1 113640 1y51A 88 29.29 2d2eA 250 29.35 1opd 85 30.11 2b8wA 328 30.48 2pzeA 229 30.67 2ghaA 382 30.74 1lnzA 342 30.88 b.117.1.1,c.37.1.8 78112,78113 1pch 88 30.98 2qwvA 208 32.17 2d0iA 333 33.31 1puiA 210 33.35 c.37.1.8 88292 2uvkA 357 33.79 2ihyA 279 34.24 1sphA 88 34.68 d.94.1.1 40544 1ptf 88 35.06 1rwsA 77 35.19 d.15.3.2 97991 3ch0A 272 35.88 2pwyA 258 36.61 2fm8A 135 37.16 d.198.1.1 133767 2acaA 189 37.19 d.63.1.2 126545 2ftxB 64 37.33 d.300.1.2 134086 2pkhA 148 37.79 1z3eB 73 37.98 a.60.3.1 124401 1wg8A 285 38.10 a.60.13.1,c.66.1.23 114605,114606 1mkyA 439 38.29 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1s68A 249 39.06 d.142.2.4 98591 1vd6A 224 39.17 c.1.18.3 119991 2dejA 350 39.62 2e5vA 472 39.74 1sfxA 109 40.58 a.4.5.50 105505 2oogA 287 40.60 2pcjA 224 40.77 1n0wA 243 40.85 c.37.1.11 79772 2j6iA 364 40.98 2dbqA 334 41.07 1x8mA 288 41.74 b.82.1.13 109516 1gsa 316 41.75 2vbfA 570 41.82 1wwkA 307 41.86 1tq6A 413 43.48 c.37.1.8 107202 2dykA 161 44.05 2yvqA 143 45.07 2eayA 233 46.84 1skoB 130 47.37 d.110.7.1 105677 2nwiA 172 48.12 1yqtA 538 48.36 1qusA 322 49.31 d.2.1.6 36991 1l6wA 220 49.67 c.1.10.1 73632 2eenA 183 50.02 1dv0A 47 50.70 a.5.2.1 16289 2yzvA 303 51.16 2ho4A 259 51.83 1wteA 272 52.29 c.52.1.29 114876 1v2yA 105 52.64 d.15.1.1 100275 1k0wA 231 53.11 c.74.1.1 77220 2jg1A 330 53.12 1a9xB 379 53.73 c.8.3.1,c.23.16.1 30732,31409 2f7vA 369 54.54 1yqbA 100 55.57 d.15.1.1 123876 3cg4A 142 56.11 1eltA 236 57.09 b.47.1.2 26281 1xmiA 291 57.20 c.37.1.12 115489 3cq9A 227 58.07 3c85A 183 58.60 1eysH 259 58.81 b.41.1.1,f.23.10.1 25484,43517 2d1hA 109 58.84 a.4.5.50 131125 2cbzA 237 59.07 1npyA 271 60.63 c.2.1.7,c.58.1.5 85995,85996 2b8nA 429 60.73 c.118.1.1 128093 2g76A 335 61.79 2pfrA 294 61.84 1mq4A 272 62.00 d.144.1.7 91391 1pjzA 203 65.25 c.66.1.36 94794 2k0qA 74 65.45 1gutA 68 65.62 b.40.6.1 65576 1f5nA 592 65.76 a.114.1.1,c.37.1.8 19077,32152 1nlfA 279 66.67 c.37.1.11 85850 2h1rA 299 66.68 1z02A 446 67.09 1z96A 40 67.38 1y8qB 640 68.15 1kzlA 208 68.61 b.43.4.3,b.43.4.3 77635,77636 2hjgA 436 68.65 1xwfA 431 69.37 c.2.1.4,c.23.12.3 122392,122393 1wlfA 179 69.55 d.31.1.1,b.52.2.3 109396,109397 2es7A 142 69.95 c.47.1.20 132314 1t5hX 504 70.83 e.23.1.1 106449 1nrjB 218 71.26 c.37.1.8 86125 1xdwA 331 75.54 1mdbA 539 75.82 e.23.1.1 79008 1u9iA 519 76.00 c.37.1.11,c.37.1.11 119637,119638 1qyrA 252 76.24 c.66.1.24 104657 1dl5A 317 76.34 c.66.1.7,d.197.1.1 64720,64721 1o6yA 299 76.82 d.144.1.7 81106 1zccA 248 77.32 c.1.18.3 124903 1li4A 432 78.71 c.2.1.4,c.23.12.3 84616,84617 1hfc 169 79.39 3bkxA 275 79.95 1d4fA 431 80.51 c.2.1.4,c.23.12.3 30110,31370 1mx3A 347 83.98 c.2.1.4,c.23.12.1 79638,79639 2va1A 256 85.50 2bibA 547 86.59 b.109.1.1,d.157.1.8 128581,128582 1nddA 76 86.71 d.15.1.1 37599 1yphE 97 86.96 2fssA 365 87.25 2bneA 241 87.30 c.73.1.3 128824 1dxy 333 88.42 2pz4A 239 89.56