# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 4.26e-12 2gcxA 75 9.14e-12 1fx7A 230 2.59e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 6.18e-06 2dtrA 226 1.81e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000957 1qw1A 121 0.003360 1bymA 97 0.2436 b.34.1.2 24458 1ni3A 392 2.218 c.37.1.8,d.15.10.2 80531,80532 2cxxA 190 2.536 c.37.1.8 131013 2qptA 550 3.580 1wf3A 301 3.624 c.37.1.8,d.52.3.1 114574,114575 1rhs 296 4.114 1mdoA 393 4.143 c.67.1.4 79013 2dbyA 368 4.710 1o69A 394 5.600 c.67.1.4 92560 1pujA 282 5.666 c.37.1.8 88294 1udxA 416 5.769 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2dejA 350 6.192 1uarA 285 6.983 c.46.1.2,c.46.1.2 107762,107763 1h75A 81 7.002 c.47.1.1 60716 2c81A 418 8.627 1z2mA 155 9.036 d.15.1.1,d.15.1.1 124387,124388 1b9hA 388 9.949 c.67.1.4 34488 1rhsA 296 10.92 c.46.1.2,c.46.1.2 32703,32704 2gj8A 172 11.39 c.37.1.8 135270 1e0cA 271 11.81 c.46.1.2,c.46.1.2 32717,32718 1a8i 842 12.71 3bn1A 373 12.93 2bb3A 221 14.95 c.90.1.1 128257 1z47A 355 15.15 1ne2A 200 15.48 c.66.1.32 85586 2nq2C 253 16.52 2e87A 357 16.74 2uvkA 357 18.24 1xkqA 280 18.44 c.2.1.2 115417 2yv5A 302 18.81 1lnzA 342 19.86 b.117.1.1,c.37.1.8 78112,78113 1sviA 195 20.67 c.37.1.8 106048 2qu8A 228 20.69 1l2tA 235 21.52 c.37.1.12 73514 2pwyA 258 22.04 1vkjA 285 22.68 c.37.1.5 108666 1xhlA 297 23.23 c.2.1.2 109591 1h65A 270 24.65 c.37.1.8 65640 1elqA 390 25.47 c.67.1.3 34436 1eluA 390 26.14 c.67.1.3 34434 1k47A 337 28.25 d.14.1.5,d.58.26.4 72040,72041 1wohA 305 31.40 c.42.1.1 109446 1pbeA 394 31.52 c.3.1.2,d.16.1.2 30338,37869 2yvtA 260 33.35 1t9hA 307 33.57 b.40.4.5,c.37.1.8 112358,112359 2py6A 409 33.58 1vplA 256 33.72 c.37.1.12 113966 2ogeA 399 35.60 1uuzA 137 37.47 d.233.1.1 100024 1z3eB 73 37.60 a.60.3.1 124401 2it1A 362 38.10 2h1rA 299 39.85 2zbvA 263 41.42 1aoeA 192 41.61 c.71.1.1 34923 2azpA 318 43.01 1egaA 301 43.83 c.37.1.8,d.52.3.1 32150,38836 1yrlA 491 45.87 2b8wA 328 47.34 2j6iA 364 47.43 2fa1A 160 47.87 d.190.1.2 133182 1y8xB 98 48.37 1nrjB 218 50.34 c.37.1.8 86125 1l6wA 220 50.76 c.1.10.1 73632 2fziA 206 52.28 c.71.1.1 134448 1puiA 210 54.16 c.37.1.8 88292 1wg8A 285 55.03 a.60.13.1,c.66.1.23 114605,114606 2ejwA 332 56.98 1s68A 249 57.93 d.142.2.4 98591 1xdwA 331 59.52 1b0uA 262 59.86 c.37.1.12 32370 1g291 372 61.14 2okfA 140 61.53 1eysH 259 63.16 b.41.1.1,f.23.10.1 25484,43517 1aru 344 63.70 2pkhA 148 64.41 1oxxK 353 66.43 b.40.6.3,c.37.1.12 93715,93716 2fjtA 182 67.20 1oxsC 353 68.71 b.40.6.3,c.37.1.12 87519,87520 1sfxA 109 70.20 a.4.5.50 105505 1qamA 244 70.93 c.66.1.24 34220 2vozA 346 71.04 1lycA 343 71.15 a.93.1.1 74344 2ev1A 222 72.49 1kmvA 186 73.00 c.71.1.1 72757 2acaA 189 73.70 d.63.1.2 126545 1sgwA 214 73.72 c.37.1.12 105541 1va0A 239 76.57 c.90.1.1 119899 2e5vA 472 76.70 2dykA 161 76.79 1cbfA 285 77.62 c.90.1.1 35587 1gcuA 295 78.44 c.2.1.3,d.81.1.4 30063,39978 2d1hA 109 79.71 a.4.5.50 131125 1ji0A 240 81.72 c.37.1.12 71665 2yqzA 263 81.84 1jj2S 119 82.48 b.34.5.1 63104 3c85A 183 82.66 2egxA 269 83.28 2o55A 258 83.34 1spxA 278 85.36 c.2.1.2 98958 1gsa 316 85.43 2ftxB 64 85.52 d.300.1.2 134086 2d0iA 333 89.56 2z6rA 265 89.59 1hrkA 359 89.59 c.92.1.1 61228