# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.06e-11 2gcxA 75 4.01e-11 1fx7A 230 6.03e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 1.56e-05 2dtrA 226 3.61e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.001255 1qw1A 121 0.004634 1bymA 97 0.4672 b.34.1.2 24458 1ni3A 392 1.646 c.37.1.8,d.15.10.2 80531,80532 2cxxA 190 1.962 c.37.1.8 131013 1udxA 416 2.415 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2qptA 550 2.573 1wf3A 301 3.117 c.37.1.8,d.52.3.1 114574,114575 2dbyA 368 3.370 1rhs 296 5.286 1mdoA 393 5.504 c.67.1.4 79013 1pujA 282 6.501 c.37.1.8 88294 1z2mA 155 7.017 d.15.1.1,d.15.1.1 124387,124388 1uarA 285 8.379 c.46.1.2,c.46.1.2 107762,107763 2dejA 350 8.841 2gj8A 172 9.051 c.37.1.8 135270 1a8i 842 9.325 1o69A 394 9.778 c.67.1.4 92560 1h75A 81 10.53 c.47.1.1 60716 1z47A 355 10.70 2nq2C 253 10.92 2c81A 418 12.33 2e87A 357 12.73 1lnzA 342 13.43 b.117.1.1,c.37.1.8 78112,78113 1e0cA 271 14.01 c.46.1.2,c.46.1.2 32717,32718 1l2tA 235 14.66 c.37.1.12 73514 2qu8A 228 15.04 1rhsA 296 15.44 c.46.1.2,c.46.1.2 32703,32704 1sviA 195 16.11 c.37.1.8 106048 2bb3A 221 16.81 c.90.1.1 128257 1b9hA 388 17.03 c.67.1.4 34488 1vplA 256 18.60 c.37.1.12 113966 1ne2A 200 19.56 c.66.1.32 85586 2yv5A 302 20.21 3bn1A 373 20.63 1elqA 390 27.03 c.67.1.3 34436 2pwyA 258 27.53 2it1A 362 28.49 1h65A 270 28.89 c.37.1.8 65640 1xkqA 280 30.24 c.2.1.2 115417 1t9hA 307 31.04 b.40.4.5,c.37.1.8 112358,112359 1egaA 301 34.26 c.37.1.8,d.52.3.1 32150,38836 1yrlA 491 34.60 1eluA 390 34.80 c.67.1.3 34434 1k47A 337 35.67 d.14.1.5,d.58.26.4 72040,72041 1g291 372 36.46 1b0uA 262 36.98 c.37.1.12 32370 1oxxK 353 37.73 b.40.6.3,c.37.1.12 93715,93716 2b8wA 328 38.08 1vkjA 285 39.36 c.37.1.5 108666 1xhlA 297 39.73 c.2.1.2 109591 2j6iA 364 40.97 1oxsC 353 41.12 b.40.6.3,c.37.1.12 87519,87520 1sgwA 214 44.32 c.37.1.12 105541 2h1rA 299 45.42 1nrjB 218 45.54 c.37.1.8 86125 1y8xB 98 46.40 2yvtA 260 47.87 1ji0A 240 48.01 c.37.1.12 71665 1wohA 305 50.04 c.42.1.1 109446 1uuzA 137 51.14 d.233.1.1 100024 1z3eB 73 52.78 a.60.3.1 124401 2ogeA 399 52.88 1s68A 249 53.06 d.142.2.4 98591 1xdwA 331 55.50 1qusA 322 56.69 d.2.1.6 36991 2fa1A 160 57.19 d.190.1.2 133182 2dykA 161 57.89 1aoeA 192 63.48 c.71.1.1 34923 2ev1A 222 64.36 1puiA 210 64.79 c.37.1.8 88292 2fziA 206 65.25 c.71.1.1 134448 2py6A 409 66.66 1gcuA 295 66.79 c.2.1.3,d.81.1.4 30063,39978 1l6wA 220 66.80 c.1.10.1 73632 1eysH 259 66.83 b.41.1.1,f.23.10.1 25484,43517 1lycA 343 69.33 a.93.1.1 74344 1aru 344 69.75 2hjgA 436 71.75 1qamA 244 72.02 c.66.1.24 34220 2qi9C 249 72.50 2vozA 346 73.07 1mkyA 439 74.81 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1pbeA 394 76.94 c.3.1.2,d.16.1.2 30338,37869 1wg8A 285 80.22 a.60.13.1,c.66.1.23 114605,114606 1va0A 239 80.73 c.90.1.1 119899 1sfxA 109 81.64 a.4.5.50 105505 1gsa 316 82.49 2zbvA 263 82.93 2pkhA 148 83.74 1cbfA 285 87.54 c.90.1.1 35587 2ejwA 332 88.76 1hfc 169 88.86