# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 5.17e-12 2gcxA 75 1.26e-11 1fx7A 230 2.42e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 7.88e-06 2dtrA 226 1.76e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000630 1qw1A 121 0.002682 1bymA 97 0.3796 b.34.1.2 24458 1ni3A 392 1.812 c.37.1.8,d.15.10.2 80531,80532 2cxxA 190 2.561 c.37.1.8 131013 1wf3A 301 2.887 c.37.1.8,d.52.3.1 114574,114575 1udxA 416 3.034 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2qptA 550 3.362 2dbyA 368 3.411 1rhs 296 4.043 1mdoA 393 4.548 c.67.1.4 79013 1h75A 81 6.801 c.47.1.1 60716 1pujA 282 7.005 c.37.1.8 88294 1a8i 842 7.141 1o69A 394 8.089 c.67.1.4 92560 1uarA 285 8.286 c.46.1.2,c.46.1.2 107762,107763 1z2mA 155 8.579 d.15.1.1,d.15.1.1 124387,124388 2dejA 350 8.995 2gj8A 172 10.84 c.37.1.8 135270 1rhsA 296 11.63 c.46.1.2,c.46.1.2 32703,32704 2c81A 418 11.99 1z47A 355 12.06 2nq2C 253 13.15 1e0cA 271 14.77 c.46.1.2,c.46.1.2 32717,32718 1b9hA 388 15.59 c.67.1.4 34488 2bb3A 221 15.94 c.90.1.1 128257 1lnzA 342 16.09 b.117.1.1,c.37.1.8 78112,78113 2e87A 357 16.70 1ne2A 200 16.86 c.66.1.32 85586 1sviA 195 19.27 c.37.1.8 106048 1l2tA 235 19.70 c.37.1.12 73514 2qu8A 228 20.06 1elqA 390 20.34 c.67.1.3 34436 3bn1A 373 20.64 1xkqA 280 21.45 c.2.1.2 115417 2pwyA 258 21.77 1eluA 390 22.82 c.67.1.3 34434 1vplA 256 25.44 c.37.1.12 113966 1xhlA 297 26.69 c.2.1.2 109591 2yv5A 302 28.74 1k47A 337 30.82 d.14.1.5,d.58.26.4 72040,72041 1vkjA 285 33.77 c.37.1.5 108666 1egaA 301 34.87 c.37.1.8,d.52.3.1 32150,38836 1uuzA 137 36.57 d.233.1.1 100024 1h65A 270 37.00 c.37.1.8 65640 1z3eB 73 37.78 a.60.3.1 124401 1wohA 305 41.12 c.42.1.1 109446 2h1rA 299 41.22 1s68A 249 41.24 d.142.2.4 98591 1yrlA 491 42.55 1t9hA 307 43.61 b.40.4.5,c.37.1.8 112358,112359 2ogeA 399 43.98 2it1A 362 45.08 1aoeA 192 45.16 c.71.1.1 34923 2b8wA 328 47.01 1wg8A 285 47.41 a.60.13.1,c.66.1.23 114605,114606 2py6A 409 47.94 2zbvA 263 48.80 1pbeA 394 48.97 c.3.1.2,d.16.1.2 30338,37869 2fziA 206 49.92 c.71.1.1 134448 1b0uA 262 49.95 c.37.1.12 32370 1y8xB 98 50.44 1sgwA 214 52.77 c.37.1.12 105541 2fa1A 160 54.82 d.190.1.2 133182 1gcuA 295 55.54 c.2.1.3,d.81.1.4 30063,39978 1nrjB 218 55.58 c.37.1.8 86125 1puiA 210 55.97 c.37.1.8 88292 1g291 372 61.71 1xdwA 331 62.67 1l6wA 220 63.44 c.1.10.1 73632 2vozA 346 63.49 2ejwA 332 63.64 1ji0A 240 63.89 c.37.1.12 71665 2j6iA 364 65.06 2yvtA 260 65.34 1eysH 259 66.88 b.41.1.1,f.23.10.1 25484,43517 2dykA 161 67.46 2azpA 318 68.34 1qamA 244 69.44 c.66.1.24 34220 2yqzA 263 69.76 1sfxA 109 70.05 a.4.5.50 105505 1lycA 343 70.47 a.93.1.1 74344 1oxxK 353 70.50 b.40.6.3,c.37.1.12 93715,93716 1aru 344 70.59 2o55A 258 75.35 1oxsC 353 75.52 b.40.6.3,c.37.1.12 87519,87520 1hrkA 359 77.32 c.92.1.1 61228 2ev1A 222 78.59 2uvkA 357 78.72 1gsa 316 80.22 2yvqA 143 82.01 1yub 245 82.63 2e5vA 472 82.80 1hfc 169 83.66 1qusA 322 84.76 d.2.1.6 36991 2z0jA 237 84.77 2qi9C 249 86.46 1cbfA 285 86.76 c.90.1.1 35587 2pkhA 148 87.52 1wwkA 307 88.19 1ks9A 291 89.93 a.100.1.7,c.2.1.6 68857,68858