# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	1.26e-10		
2h3jA	75	2.57e-10		
1fx7A	230	9.27e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000362		
2dtrA	226	0.000397	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.000660		
2dtr	226	0.5378		
1bymA	97	0.6260	b.34.1.2	24458
1uarA	285	2.113	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	2.555		
1ni3A	392	5.010	c.37.1.8,d.15.10.2	80531,80532
1rhsA	296	5.167	c.46.1.2,c.46.1.2	32703,32704
1h75A	81	5.838	c.47.1.1	60716
1e0cA	271	6.739	c.46.1.2,c.46.1.2	32717,32718
2dbyA	368	7.022		
1ne2A	200	8.435	c.66.1.32	85586
2cxxA	190	9.99	c.37.1.8	131013
1vekA	84	13.05	a.5.2.1	113636
1pujA	282	14.43	c.37.1.8	88294
2qptA	550	18.77		
1qamA	244	26.70	c.66.1.24	34220
1pbeA	394	27.32	c.3.1.2,d.16.1.2	30338,37869
2gj8A	172	28.55	c.37.1.8	135270
1wf3A	301	31.23	c.37.1.8,d.52.3.1	114574,114575
1z2mA	155	32.97	d.15.1.1,d.15.1.1	124387,124388
2oqoA	200	33.80		
3bn1A	373	36.81		
1qusA	322	39.34	d.2.1.6	36991
2h1rA	299	40.07		
1v4vA	376	41.31	c.87.1.3	100313
1y8xB	98	41.70		
1z3eB	73	41.92	a.60.3.1	124401
2qu8A	228	46.16		
1k47A	337	46.18	d.14.1.5,d.58.26.4	72040,72041
1wggA	96	46.63	d.15.1.1	114612
1y8qB	640	47.59		
1sviA	195	49.73	c.37.1.8	106048
2ho4A	259	56.19		
1dv0A	47	56.47	a.5.2.1	16289
2o55A	258	60.21		
2yqzA	263	60.53		
2es7A	142	62.44	c.47.1.20	132314
1z96A	40	66.07		
1h65A	270	66.99	c.37.1.8	65640
1phtA	85	68.62	b.34.2.1	24483
2bb3A	221	68.73	c.90.1.1	128257
1f6dA	376	71.70	c.87.1.3	35467
2pibA	216	72.90		
1cbfA	285	73.81	c.90.1.1	35587
1udxA	416	77.40	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1mdoA	393	77.47	c.67.1.4	79013
2gaiA	633	77.60		
2nwiA	172	78.74		
1xkqA	280	79.55	c.2.1.2	115417
2dejA	350	80.92		
2ogeA	399	83.58		
1a8i	842	83.65		
1erxA	184	85.24	b.60.1.1	27164
1z5hA	780	86.51		
2j6iA	364	86.85		
1wrbA	253	88.52	c.37.1.19	121192