# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.16e-12 2gcxA 75 8.79e-12 1fx7A 230 3.47e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 7.68e-06 2dtrA 226 1.68e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000373 1qw1A 121 0.002541 1bymA 97 0.2544 b.34.1.2 24458 1rhs 296 2.480 1wf3A 301 2.488 c.37.1.8,d.52.3.1 114574,114575 1ni3A 392 2.671 c.37.1.8,d.15.10.2 80531,80532 2dbyA 368 2.749 1pujA 282 2.928 c.37.1.8 88294 2qptA 550 3.478 2cxxA 190 4.401 c.37.1.8 131013 1rhsA 296 4.726 c.46.1.2,c.46.1.2 32703,32704 1uarA 285 5.891 c.46.1.2,c.46.1.2 107762,107763 1z2mA 155 6.571 d.15.1.1,d.15.1.1 124387,124388 1mdoA 393 6.970 c.67.1.4 79013 1o69A 394 7.138 c.67.1.4 92560 1z47A 355 8.711 1h75A 81 8.844 c.47.1.1 60716 1l2tA 235 8.947 c.37.1.12 73514 1e0cA 271 9.337 c.46.1.2,c.46.1.2 32717,32718 1udxA 416 10.43 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1b9hA 388 10.44 c.67.1.4 34488 2nq2C 253 11.23 2dejA 350 11.41 1ne2A 200 12.05 c.66.1.32 85586 2gj8A 172 12.70 c.37.1.8 135270 2e87A 357 14.72 1vplA 256 17.23 c.37.1.12 113966 2yv5A 302 17.96 2qu8A 228 18.38 2c81A 418 20.84 1a8i 842 23.62 1elqA 390 23.79 c.67.1.3 34436 2okfA 140 24.58 2it1A 362 25.05 1wohA 305 25.62 c.42.1.1 109446 2fa1A 160 27.94 d.190.1.2 133182 3bn1A 373 28.17 1vkjA 285 28.27 c.37.1.5 108666 1k47A 337 29.53 d.14.1.5,d.58.26.4 72040,72041 1eluA 390 29.63 c.67.1.3 34434 1egaA 301 31.34 c.37.1.8,d.52.3.1 32150,38836 1lnzA 342 33.57 b.117.1.1,c.37.1.8 78112,78113 1eysH 259 35.52 b.41.1.1,f.23.10.1 25484,43517 1t9hA 307 36.64 b.40.4.5,c.37.1.8 112358,112359 2uvkA 357 37.08 1h65A 270 37.14 c.37.1.8 65640 1yrlA 491 38.02 1aoeA 192 41.53 c.71.1.1 34923 2ogeA 399 41.55 3cnvA 162 41.63 3c85A 183 43.35 2b8wA 328 43.56 2ev1A 222 44.39 1hrkA 359 44.50 c.92.1.1 61228 2h1rA 299 45.14 1oxsC 353 46.80 b.40.6.3,c.37.1.12 87519,87520 1b0uA 262 47.98 c.37.1.12 32370 1vekA 84 49.41 a.5.2.1 113636 1oxxK 353 51.12 b.40.6.3,c.37.1.12 93715,93716 2qi9C 249 51.31 2dykA 161 51.33 2azpA 318 51.63 1sviA 195 52.57 c.37.1.8 106048 2ikkA 173 53.09 2egxA 269 55.81 2gaiA 633 56.23 2pkhA 148 56.40 1nrjB 218 56.75 c.37.1.8 86125 2ejwA 332 57.48 1s68A 249 58.92 d.142.2.4 98591 2inbA 140 59.10 1z3eB 73 59.11 a.60.3.1 124401 2p19A 149 59.88 1npyA 271 59.96 c.2.1.7,c.58.1.5 85995,85996 2yvqA 143 60.28 1ji0A 240 60.40 c.37.1.12 71665 1g291 372 60.48 1qamA 244 61.27 c.66.1.24 34220 1puiA 210 62.12 c.37.1.8 88292 1z96A 40 62.49 1gcuA 295 64.01 c.2.1.3,d.81.1.4 30063,39978 2fjtA 182 65.89 2nwiA 172 66.35 2e5vA 472 66.63 1l6wA 220 66.85 c.1.10.1 73632 2eenA 183 67.15 1tq6A 413 68.83 c.37.1.8 107202 1qusA 322 71.24 d.2.1.6 36991 1va0A 239 71.46 c.90.1.1 119899 1sgwA 214 71.55 c.37.1.12 105541 1cbfA 285 71.66 c.90.1.1 35587 1xkqA 280 72.37 c.2.1.2 115417 2fziA 206 72.54 c.71.1.1 134448 2ftxB 64 72.88 d.300.1.2 134086 1xdwA 331 75.74 2j6iA 364 77.66 1mkyA 439 79.75 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2vozA 346 79.85 1uuzA 137 79.98 d.233.1.1 100024 1ks9A 291 82.64 a.100.1.7,c.2.1.6 68857,68858 1mq4A 272 83.70 d.144.1.7 91391 1f5nA 592 84.20 a.114.1.1,c.37.1.8 19077,32152 1xhlA 297 84.22 c.2.1.2 109591 1gsa 316 85.41 1pbeA 394 86.19 c.3.1.2,d.16.1.2 30338,37869 2ooiA 162 87.76 2acaA 189 88.43 d.63.1.2 126545 1sfxA 109 88.61 a.4.5.50 105505 2d1hA 109 89.67 a.4.5.50 131125