# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 7.01e-12 2gcxA 75 1.65e-11 1fx7A 230 5.20e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 1.89e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000179 2dtr 226 0.000485 1qw1A 121 0.003654 1bymA 97 0.2162 b.34.1.2 24458 2r7dA 469 0.4150 1udxA 416 1.722 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1pguA 615 3.080 b.69.4.1,b.69.4.1 88069,88070 1ihgA 370 3.483 a.118.8.1,b.62.1.1 62380,62381 1vplA 256 3.774 c.37.1.12 113966 1pujA 282 4.448 c.37.1.8 88294 2cxxA 190 4.536 c.37.1.8 131013 1uufA 369 4.864 b.35.1.2,c.2.1.1 100006,100007 2uvkA 357 4.906 2pjzA 263 5.043 2dbyA 368 5.101 1fcdA 401 5.498 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1h65A 270 6.631 c.37.1.8 65640 1suuA 312 7.530 b.68.10.1 99006 2z7bA 270 7.785 1z2mA 155 8.113 d.15.1.1,d.15.1.1 124387,124388 2yv5A 302 8.209 1gteA 1025 8.491 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2ho3A 325 9.718 2j6iA 364 10.08 1zvkA 358 11.49 2qedA 258 11.65 2it1A 362 11.96 2gj8A 172 11.97 c.37.1.8 135270 1jvsA 400 12.05 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1ksiA 642 12.17 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1h75A 81 13.70 c.47.1.1 60716 1l2tA 235 14.16 c.37.1.12 73514 2zexA 147 14.93 1bio 228 16.05 3bh1A 507 16.23 1qamA 244 17.17 c.66.1.24 34220 2azpA 318 17.61 1lnzA 342 18.09 b.117.1.1,c.37.1.8 78112,78113 2q4mA 217 18.25 d.23.1.2 139870 2hhiA 204 18.53 2ez2A 456 21.67 1fecA 490 21.78 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 3bk5A 237 22.82 1ry9A 145 22.97 d.198.1.1 98094 2qi9C 249 23.15 2j69A 695 23.24 2bb3A 221 23.25 c.90.1.1 128257 1khbA 625 23.34 c.91.1.1,c.109.1.1 68606,68607 1sc6A 404 24.40 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2fa1A 160 24.77 d.190.1.2 133182 1gcuA 295 25.16 c.2.1.3,d.81.1.4 30063,39978 1cqxA 403 26.40 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1po0A 751 26.54 f.4.3.3 94960 1n0wA 243 27.21 c.37.1.11 79772 1qopB 396 27.44 c.79.1.1 35270 1xzzA 246 28.11 1zowA 313 28.36 2zbvA 263 29.52 2i5nH 258 29.75 b.41.1.1,f.23.10.1 137064,137065 2fziA 206 30.41 c.71.1.1 134448 2ooiA 162 31.92 2fomB 185 32.47 b.47.1.3 133884 3c85A 183 32.52 1id0A 152 32.85 d.122.1.3 66111 1ars 396 36.08 1cghA 224 36.52 b.47.1.2 26290 1ozhA 566 37.22 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2pkhA 148 39.75 1zkcA 197 39.97 b.62.1.1 125182 2irpA 208 40.51 1t8hA 277 40.80 d.194.1.2 106664 1sviA 195 43.43 c.37.1.8 106048 2p19A 149 43.66 2okfA 140 43.82 1eejA 216 44.71 c.47.1.9,d.17.3.1 33057,38071 2qwvA 208 44.87 1gzwA 134 45.02 b.29.1.3 90535 2b8wA 328 45.42 1ne2A 200 45.82 c.66.1.32 85586 2qm8A 337 46.32 2geeA 203 46.45 2ef0A 301 46.68 1p2hA 571 47.70 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2vozA 346 47.72 1f46A 140 47.81 d.129.4.1 59643 3cnvA 162 48.14 2anpA 291 48.20 c.56.5.4 127056 1k47A 337 48.60 d.14.1.5,d.58.26.4 72040,72041 2ikkA 173 48.98 1eysH 259 50.22 b.41.1.1,f.23.10.1 25484,43517 1d3cA 686 50.44 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1v58A 241 50.52 c.47.1.9,d.17.3.1 108371,108372 1jvbA 347 52.94 b.35.1.2,c.2.1.1 77181,77182 1g291 372 53.13 2ohxA 374 53.66 b.35.1.2,c.2.1.1 24669,29685 1rhsA 296 53.68 c.46.1.2,c.46.1.2 32703,32704 1smlA 269 53.82 d.157.1.1 42053 1czfA 362 53.94 b.80.1.3 28031 1xm9A 457 54.14 a.118.1.24 122142 1t5oA 351 54.41 c.124.1.5 106459 1sgwA 214 54.57 c.37.1.12 105541 1g6hA 257 55.21 c.37.1.12 60318 2ogeA 399 55.38 2nq2C 253 55.99 1wf3A 301 56.87 c.37.1.8,d.52.3.1 114574,114575 1b9hA 388 59.30 c.67.1.4 34488 2yxoA 267 59.68 1zdsA 336 62.14 b.6.1.3,b.6.1.3 124952,124953 2eenA 183 63.05 2rb7A 364 63.92 1e4mM 501 63.93 c.1.8.4 59226 2jmwA 86 64.15 2h1rA 299 64.29 1u9iA 519 66.03 c.37.1.11,c.37.1.11 119637,119638 1efpB 252 66.34 c.26.2.3 31636 2hjgA 436 66.65 1gsa 316 67.03 1fqtA 112 67.19 b.33.1.1 24441 1uuzA 137 67.85 d.233.1.1 100024 1a58A 177 68.22 b.62.1.1 27495 1wl7A 312 68.31 b.67.2.1 120996 1j1iA 296 68.89 c.69.1.10 83977 1kmoA 774 69.82 f.4.3.3 72753 1fi8A 228 70.16 b.47.1.2 26374 1vlbA 907 71.05 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2r5oA 188 71.47 1nrjB 218 71.90 c.37.1.8 86125 1hfc 169 72.69 2ff7A 247 72.83 c.37.1.12 133377 2gaiA 633 75.16 1m6iA 493 76.65 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1jj2S 119 77.78 b.34.5.1 63104 2q01A 497 78.54 2gjgA 248 78.60 1o6yA 299 80.59 d.144.1.7 81106 1vbuA 328 81.20 c.1.8.3 119963 1gntA 553 82.59 e.26.1.1 70290 1g3pA 217 82.73 b.37.1.1,b.37.1.1 24788,24789 2ev1A 222 83.05 1z3eB 73 83.50 a.60.3.1 124401 1ti6A 875 83.58 b.52.2.2,c.81.1.1 106974,106975 1uarA 285 85.12 c.46.1.2,c.46.1.2 107762,107763 2p0oA 372 85.18 1z47A 355 85.27 1vekA 84 85.27 a.5.2.1 113636 2rhsB 800 85.31 2fp7B 172 86.24 b.47.1.3 133899 1gnlA 544 86.94 e.26.1.1 70287 1vp4A 425 87.24 c.67.1.1 113935 1xmiA 291 88.30 c.37.1.12 115489