# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 5.31e-13 2gcxA 75 1.89e-12 1fx7A 230 8.88e-07 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 3.63e-06 2dtrA 226 4.45e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000196 1qw1A 121 0.001132 1bymA 97 0.1339 b.34.1.2 24458 1rhs 296 2.209 1ni3A 392 3.785 c.37.1.8,d.15.10.2 80531,80532 1rhsA 296 3.913 c.46.1.2,c.46.1.2 32703,32704 2qptA 550 3.980 2dbyA 368 4.090 1pujA 282 4.128 c.37.1.8 88294 1wf3A 301 4.361 c.37.1.8,d.52.3.1 114574,114575 1uarA 285 5.137 c.46.1.2,c.46.1.2 107762,107763 2cxxA 190 6.190 c.37.1.8 131013 1h75A 81 6.981 c.47.1.1 60716 1z2mA 155 7.978 d.15.1.1,d.15.1.1 124387,124388 1udxA 416 8.671 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1mdoA 393 9.338 c.67.1.4 79013 2dejA 350 9.444 1z47A 355 11.64 1e0cA 271 11.90 c.46.1.2,c.46.1.2 32717,32718 2nq2C 253 12.44 1o69A 394 13.10 c.67.1.4 92560 1ne2A 200 16.39 c.66.1.32 85586 1l2tA 235 16.93 c.37.1.12 73514 1b9hA 388 17.08 c.67.1.4 34488 1vplA 256 21.12 c.37.1.12 113966 2e87A 357 24.11 2gj8A 172 24.13 c.37.1.8 135270 2c81A 418 24.58 1wohA 305 24.78 c.42.1.1 109446 2qu8A 228 25.18 1elqA 390 25.34 c.67.1.3 34436 2fa1A 160 26.19 d.190.1.2 133182 1vkjA 285 27.05 c.37.1.5 108666 2yv5A 302 27.50 1a8i 842 31.22 2ejwA 332 31.51 1cbfA 285 32.90 c.90.1.1 35587 2egxA 269 33.55 1gcuA 295 33.98 c.2.1.3,d.81.1.4 30063,39978 1aoeA 192 34.99 c.71.1.1 34923 1eluA 390 35.71 c.67.1.3 34434 1l6wA 220 35.85 c.1.10.1 73632 1vekA 84 37.60 a.5.2.1 113636 1k47A 337 37.89 d.14.1.5,d.58.26.4 72040,72041 1va0A 239 38.38 c.90.1.1 119899 2h1rA 299 39.18 1o6yA 299 39.41 d.144.1.7 81106 3bn1A 373 40.77 1lnzA 342 40.98 b.117.1.1,c.37.1.8 78112,78113 2bb3A 221 42.10 c.90.1.1 128257 3cnvA 162 43.58 2pkhA 148 44.10 1eysH 259 44.11 b.41.1.1,f.23.10.1 25484,43517 2vozA 346 44.73 1mq4A 272 45.08 d.144.1.7 91391 2it1A 362 45.23 1s68A 249 45.96 d.142.2.4 98591 2ikkA 173 45.99 1uuzA 137 46.40 d.233.1.1 100024 2ev1A 222 47.06 2yvqA 143 47.67 1z3eB 73 48.58 a.60.3.1 124401 2fziA 206 50.49 c.71.1.1 134448 2p19A 149 52.42 2okfA 140 52.63 2py6A 409 54.40 2qi9C 249 55.48 2gaiA 633 55.91 1hfc 169 56.24 2ogeA 399 56.41 1b0uA 262 58.24 c.37.1.12 32370 1gsa 316 62.75 1egaA 301 63.35 c.37.1.8,d.52.3.1 32150,38836 1z96A 40 63.58 3c85A 183 64.66 1xkqA 280 64.95 c.2.1.2 115417 1hrkA 359 66.20 c.92.1.1 61228 1ym5A 300 66.20 1v4vA 376 66.40 c.87.1.3 100313 1y56A 493 66.83 2z0jA 237 66.87 2uvkA 357 67.83 2o55A 258 68.83 1qamA 244 73.10 c.66.1.24 34220 1zccA 248 73.35 c.1.18.3 124903 1sviA 195 73.99 c.37.1.8 106048 1puiA 210 74.36 c.37.1.8 88292 2b8wA 328 77.44 1y8xB 98 78.30 1aru 344 78.73 1pvtA 238 78.75 c.74.1.1 95189 2eenA 183 79.64 1ks9A 291 81.35 a.100.1.7,c.2.1.6 68857,68858 1xhlA 297 82.12 c.2.1.2 109591 1ji0A 240 82.15 c.37.1.12 71665 2ftxB 64 82.62 d.300.1.2 134086 1yrlA 491 82.83 1qusA 322 83.18 d.2.1.6 36991 1lycA 343 83.24 a.93.1.1 74344 1sfxA 109 84.05 a.4.5.50 105505 1pjqA 457 84.46 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2dykA 161 84.88 3bq3A 270 85.49 3ch0A 272 85.56 1h65A 270 85.65 c.37.1.8 65640 2azpA 318 85.71 1sgwA 214 87.00 c.37.1.12 105541 2ho4A 259 87.39 1g291 372 88.24 1ve2A 235 88.25 c.90.1.1 120008 2ooiA 162 89.69