# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.61e-11 2gcxA 75 3.22e-11 1fx7A 230 1.04e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 2.27e-05 2dtrA 226 3.80e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.001358 1qw1A 121 0.004079 1bymA 97 0.1514 b.34.1.2 24458 2qptA 550 5.032 1ni3A 392 5.051 c.37.1.8,d.15.10.2 80531,80532 1wf3A 301 5.393 c.37.1.8,d.52.3.1 114574,114575 1pujA 282 7.848 c.37.1.8 88294 1rhs 296 8.248 2cxxA 190 8.486 c.37.1.8 131013 1z2mA 155 8.677 d.15.1.1,d.15.1.1 124387,124388 1uarA 285 9.284 c.46.1.2,c.46.1.2 107762,107763 1udxA 416 9.725 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1mdoA 393 9.95 c.67.1.4 79013 2dbyA 368 11.57 1h75A 81 13.62 c.47.1.1 60716 2dejA 350 15.92 1rhsA 296 20.96 c.46.1.2,c.46.1.2 32703,32704 2qu8A 228 21.16 2nq2C 253 21.31 2yvtA 260 21.49 1z47A 355 23.54 2gj8A 172 25.10 c.37.1.8 135270 2c81A 418 25.41 2e87A 357 26.14 1ne2A 200 27.03 c.66.1.32 85586 1e0cA 271 27.23 c.46.1.2,c.46.1.2 32717,32718 2ev1A 222 27.24 1lnzA 342 28.32 b.117.1.1,c.37.1.8 78112,78113 1b9hA 388 28.65 c.67.1.4 34488 1xkqA 280 30.31 c.2.1.2 115417 1o69A 394 31.01 c.67.1.4 92560 2j6iA 364 31.96 1gcuA 295 35.11 c.2.1.3,d.81.1.4 30063,39978 1a8i 842 36.31 1elqA 390 37.71 c.67.1.3 34436 2bb3A 221 39.31 c.90.1.1 128257 3bn1A 373 43.37 3b9qA 302 47.65 1l2tA 235 48.29 c.37.1.12 73514 1vplA 256 48.66 c.37.1.12 113966 1o6yA 299 49.25 d.144.1.7 81106 1sviA 195 50.21 c.37.1.8 106048 1y8xB 98 50.91 1eysH 259 51.50 b.41.1.1,f.23.10.1 25484,43517 1xhlA 297 52.97 c.2.1.2 109591 1z3eB 73 53.69 a.60.3.1 124401 1vkjA 285 54.70 c.37.1.5 108666 2pwyA 258 55.77 2h1rA 299 57.19 1wohA 305 57.43 c.42.1.1 109446 1hrkA 359 58.04 c.92.1.1 61228 1yrlA 491 58.16 1egaA 301 58.79 c.37.1.8,d.52.3.1 32150,38836 2ejwA 332 61.72 2fziA 206 62.91 c.71.1.1 134448 2yv5A 302 65.14 1eluA 390 65.34 c.67.1.3 34434 1k47A 337 66.57 d.14.1.5,d.58.26.4 72040,72041 1uuzA 137 69.44 d.233.1.1 100024 1mq4A 272 72.72 d.144.1.7 91391 1li4A 432 75.74 c.2.1.4,c.23.12.3 84616,84617 2qi9C 249 76.28 1vekA 84 76.57 a.5.2.1 113636 1t9hA 307 77.27 b.40.4.5,c.37.1.8 112358,112359 2uvkA 357 78.83 1qusA 322 80.43 d.2.1.6 36991 1aru 344 81.44 2it1A 362 84.65 1r1gA 31 85.10 g.3.7.2 96816 2fa1A 160 85.64 d.190.1.2 133182 1y8qB 640 85.67 1nrjB 218 86.87 c.37.1.8 86125 1yub 245 88.06 1aoeA 192 88.87 c.71.1.1 34923 1pvtA 238 88.98 c.74.1.1 95189 2ogeA 399 89.19