# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 8.56e-12 2gcxA 75 8.94e-12 1fx7A 230 2.40e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 1.35e-05 2dtrA 226 1.46e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.001182 2dtr 226 0.002953 1bymA 97 0.1932 b.34.1.2 24458 1ni3A 392 1.891 c.37.1.8,d.15.10.2 80531,80532 1wf3A 301 2.858 c.37.1.8,d.52.3.1 114574,114575 2cxxA 190 3.673 c.37.1.8 131013 1pujA 282 3.887 c.37.1.8 88294 2dbyA 368 4.323 2qptA 550 4.649 1z2mA 155 5.558 d.15.1.1,d.15.1.1 124387,124388 1rhs 296 5.701 1mdoA 393 6.796 c.67.1.4 79013 1uarA 285 6.920 c.46.1.2,c.46.1.2 107762,107763 1h75A 81 8.168 c.47.1.1 60716 1udxA 416 9.481 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2gj8A 172 9.761 c.37.1.8 135270 2dejA 350 10.33 2c81A 418 10.66 1rhsA 296 12.22 c.46.1.2,c.46.1.2 32703,32704 2e87A 357 13.09 2nq2C 253 13.15 2ev1A 222 13.96 3bn1A 373 15.16 1e0cA 271 17.05 c.46.1.2,c.46.1.2 32717,32718 1yrlA 491 17.48 2qu8A 228 17.83 1elqA 390 19.99 c.67.1.3 34436 1y8xB 98 20.69 2yv5A 302 21.12 1ne2A 200 21.18 c.66.1.32 85586 1sviA 195 21.71 c.37.1.8 106048 1z47A 355 21.91 1t9hA 307 21.95 b.40.4.5,c.37.1.8 112358,112359 1b9hA 388 25.06 c.67.1.4 34488 1xkqA 280 25.11 c.2.1.2 115417 1l2tA 235 26.19 c.37.1.12 73514 1egaA 301 26.81 c.37.1.8,d.52.3.1 32150,38836 1eluA 390 27.10 c.67.1.3 34434 1o69A 394 30.25 c.67.1.4 92560 2ogeA 399 36.10 1vekA 84 36.69 a.5.2.1 113636 1z3eB 73 38.70 a.60.3.1 124401 2yvtA 260 40.15 1hrkA 359 41.38 c.92.1.1 61228 1l6wA 220 42.88 c.1.10.1 73632 1lnzA 342 44.40 b.117.1.1,c.37.1.8 78112,78113 2qi9C 249 44.71 2it1A 362 45.24 1puiA 210 45.95 c.37.1.8 88292 1xhlA 297 46.52 c.2.1.2 109591 1vplA 256 48.61 c.37.1.12 113966 2pwyA 258 50.59 1nrjB 218 51.60 c.37.1.8 86125 2dykA 161 55.47 1wohA 305 56.73 c.42.1.1 109446 2e5vA 472 61.13 2o55A 258 63.07 3cnvA 162 63.16 2d0iA 333 63.50 2fa1A 160 64.04 d.190.1.2 133182 1v5tA 90 64.20 d.15.1.1 108385 2egxA 269 67.04 2azpA 318 67.57 1b0uA 262 67.67 c.37.1.12 32370 2bb3A 221 69.88 c.90.1.1 128257 1wg8A 285 71.19 a.60.13.1,c.66.1.23 114605,114606 2dbqA 334 73.39 1hfc 169 73.89 1a8i 842 77.78 2h1rA 299 77.82 1sgwA 214 78.90 c.37.1.12 105541 2j6iA 364 79.17 2b8wA 328 79.34 2yvlA 248 80.91 1vg5A 73 81.58 a.5.2.1 113640 1ji0A 240 82.57 c.37.1.12 71665 1mq4A 272 83.46 d.144.1.7 91391 2px2A 269 85.37 2qh8A 302 86.58 1wwkA 307 87.49 1o6yA 299 88.12 d.144.1.7 81106 1oxsC 353 89.43 b.40.6.3,c.37.1.12 87519,87520