# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 5.79e-11 2gcxA 75 6.57e-11 1fx7A 230 8.95e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 3.15e-05 2dtrA 226 5.01e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.001133 1qw1A 121 0.002606 1bymA 97 0.4394 b.34.1.2 24458 1ni3A 392 1.736 c.37.1.8,d.15.10.2 80531,80532 1wf3A 301 2.869 c.37.1.8,d.52.3.1 114574,114575 1pujA 282 3.246 c.37.1.8 88294 2dbyA 368 3.287 2cxxA 190 3.607 c.37.1.8 131013 2qptA 550 4.194 2gj8A 172 6.090 c.37.1.8 135270 1rhs 296 6.735 1z2mA 155 8.379 d.15.1.1,d.15.1.1 124387,124388 1uarA 285 8.659 c.46.1.2,c.46.1.2 107762,107763 2qu8A 228 9.417 1mdoA 393 10.59 c.67.1.4 79013 1h75A 81 12.11 c.47.1.1 60716 1z47A 355 12.18 2e87A 357 13.01 2yv5A 302 13.03 2nq2C 253 13.24 1ne2A 200 13.25 c.66.1.32 85586 1udxA 416 13.36 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1rhsA 296 14.74 c.46.1.2,c.46.1.2 32703,32704 1o69A 394 14.84 c.67.1.4 92560 1t9hA 307 14.99 b.40.4.5,c.37.1.8 112358,112359 1e0cA 271 16.85 c.46.1.2,c.46.1.2 32717,32718 1elqA 390 18.18 c.67.1.3 34436 1l2tA 235 19.28 c.37.1.12 73514 1y8xB 98 19.42 1sviA 195 20.94 c.37.1.8 106048 3bn1A 373 21.82 2c81A 418 21.99 2it1A 362 22.12 1eluA 390 22.96 c.67.1.3 34434 1egaA 301 23.80 c.37.1.8,d.52.3.1 32150,38836 1vplA 256 23.80 c.37.1.12 113966 2qi9C 249 24.31 1lnzA 342 25.44 b.117.1.1,c.37.1.8 78112,78113 1sgwA 214 25.66 c.37.1.12 105541 2bb3A 221 26.13 c.90.1.1 128257 1xkqA 280 28.06 c.2.1.2 115417 1b9hA 388 28.40 c.67.1.4 34488 1b0uA 262 29.41 c.37.1.12 32370 2dejA 350 33.57 1a8i 842 37.75 2j6iA 364 38.92 2ev1A 222 40.20 1yrlA 491 40.33 1z3eB 73 41.98 a.60.3.1 124401 2zbvA 263 43.95 1ji0A 240 44.13 c.37.1.12 71665 1nrjB 218 44.96 c.37.1.8 86125 1puiA 210 45.99 c.37.1.8 88292 1h65A 270 46.50 c.37.1.8 65640 2fa1A 160 47.33 d.190.1.2 133182 2dykA 161 47.70 1qamA 244 49.10 c.66.1.24 34220 1g291 372 50.57 2b8wA 328 52.94 1vekA 84 56.14 a.5.2.1 113636 1lycA 343 56.26 a.93.1.1 74344 1oxsC 353 57.91 b.40.6.3,c.37.1.12 87519,87520 1uuzA 137 61.51 d.233.1.1 100024 2pwyA 258 62.40 1xhlA 297 63.92 c.2.1.2 109591 1oxxK 353 63.92 b.40.6.3,c.37.1.12 93715,93716 3cnvA 162 63.93 2azpA 318 65.81 1r1gA 31 66.50 g.3.7.2 96816 2ogeA 399 67.07 2yqzA 263 67.84 1d6jA 211 68.30 c.37.1.4 31940 2okfA 140 68.36 2ejwA 332 69.35 1hrkA 359 72.08 c.92.1.1 61228 1zccA 248 72.26 c.1.18.3 124903 1aoeA 192 72.92 c.71.1.1 34923 2gaiA 633 74.34 1l6wA 220 75.23 c.1.10.1 73632 1tq6A 413 76.32 c.37.1.8 107202 2px2A 269 76.74 1dxy 333 77.09 1qusA 322 77.39 d.2.1.6 36991 2h1rA 299 77.91 1aru 344 78.01 1g6hA 257 80.84 c.37.1.12 60318 1wg8A 285 84.91 a.60.13.1,c.66.1.23 114605,114606 1ks9A 291 86.91 a.100.1.7,c.2.1.6 68857,68858 2pkhA 148 88.08 1skoB 130 88.19 d.110.7.1 105677 2ixeA 271 88.45 1v5tA 90 88.58 d.15.1.1 108385