# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 7.95e-12 2gcxA 75 8.00e-12 2dtrA 226 5.14e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 1.25e-05 1fx7A 230 3.19e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000877 2dtr 226 0.001252 1pujA 282 2.936 c.37.1.8 88294 2cxxA 190 3.676 c.37.1.8 131013 2dbyA 368 5.358 1ni3A 392 7.739 c.37.1.8,d.15.10.2 80531,80532 1bymA 97 8.605 b.34.1.2 24458 2a1vA 144 9.795 d.198.3.1 126019 1rhs 296 10.63 1uarA 285 11.27 c.46.1.2,c.46.1.2 107762,107763 2gj8A 172 12.93 c.37.1.8 135270 1qvcA 145 13.39 b.40.4.3 25284 1rhsA 296 19.02 c.46.1.2,c.46.1.2 32703,32704 2dejA 350 21.25 1ppjD 241 22.94 a.3.1.3,f.23.11.1 104258,104259 1f5nA 592 23.21 a.114.1.1,c.37.1.8 19077,32152 1uuzA 137 25.31 d.233.1.1 100024 1y8qB 640 25.53 1aru 344 26.16 2qptA 550 27.51 2qu8A 228 32.20 1sviA 195 32.23 c.37.1.8 106048 1mq4A 272 33.19 d.144.1.7 91391 1mkyA 439 33.72 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1tq6A 413 34.46 c.37.1.8 107202 1k47A 337 34.76 d.14.1.5,d.58.26.4 72040,72041 1e0cA 271 37.75 c.46.1.2,c.46.1.2 32717,32718 3cx5D 248 38.40 1lycA 343 39.38 a.93.1.1 74344 1wrbA 253 40.12 c.37.1.19 121192 2e3bA 344 40.64 a.93.1.1 132024 1qyrA 252 41.67 c.66.1.24 104657 2o55A 258 43.33 1tq4A 413 48.68 c.37.1.8 107201 1zmbA 290 50.42 c.23.10.7 125355 1yrlA 491 51.64 1l2tA 235 57.35 c.37.1.12 73514 2h1rA 299 59.43 2vh1A 220 61.13 1qamA 244 61.40 c.66.1.24 34220 1ezvD 245 62.99 a.3.1.3,f.23.11.1 59546,59547 1vkjA 285 63.31 c.37.1.5 108666 1qdeA 224 63.90 c.37.1.19 32410 1udxA 416 64.02 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 3b9qA 302 64.59 1wggA 96 68.10 d.15.1.1 114612 1mspA 126 68.14 b.1.11.2 22333 1utcA 363 68.18 a.118.1.4,b.69.6.1 99914,99915 1qusA 322 68.94 d.2.1.6 36991 1egaA 301 69.36 c.37.1.8,d.52.3.1 32150,38836 1ks9A 291 69.96 a.100.1.7,c.2.1.6 68857,68858 1zccA 248 70.35 c.1.18.3 124903 1z3eB 73 71.24 a.60.3.1 124401 2dchX 216 72.96 2pkhA 148 72.99 2yqzA 263 73.24 1h75A 81 73.54 c.47.1.1 60716 1z5hA 780 74.08 1h65A 270 75.28 c.37.1.8 65640 2i4iA 417 75.44 2b8wA 328 75.49 1quqA 129 75.49 b.40.4.3 25303 1eysH 259 76.67 b.41.1.1,f.23.10.1 25484,43517 1k4zA 159 77.06 b.80.5.1 72070 2olsA 794 77.19 1erxA 184 78.65 b.60.1.1 27164 2z0jA 237 79.19 2gukA 120 79.64 2hjgA 436 80.12 2bycA 137 81.13 d.58.10.2 129476 3b34A 891 81.86 2azpA 318 82.06 1jalA 363 83.46 c.37.1.8,d.15.10.2 84138,84139 1kb9D 246 83.53 a.3.1.3,f.23.11.1 77317,77318 1nrjB 218 83.68 c.37.1.8 86125 1ne2A 200 85.08 c.66.1.32 85586 1puiA 210 85.58 c.37.1.8 88292 2qh8A 302 86.01 2mspA 126 86.15 b.1.11.2 22335 1y8xB 98 87.68 1ym5A 300 89.06 1widA 130 89.97 b.142.1.2 114667