# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 1.50e-06 2h3jA 75 1.42e-05 1fx7A 230 0.002648 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bymA 97 0.5464 b.34.1.2 24458 2qq9A 226 0.9604 2oggA 152 1.645 1tuc 63 2.808 1qcsA 211 3.950 b.52.2.3,d.31.1.1 26927,38461 1fdrA 248 4.505 b.43.4.2,c.25.1.1 25653,31543 1qw1A 121 5.096 1j48A 110 5.099 b.1.7.1 84112 3cnvA 162 5.213 1wlpB 138 5.500 b.34.2.1 121010 1ybyA 215 5.634 1fdr 248 6.815 2pkhA 148 7.934 1dj7B 75 7.937 b.34.4.3 24598 2fa1A 160 8.736 d.190.1.2 133182 2elfA 370 9.188 1noaA 113 9.389 b.1.7.1 22208 1uebA 184 10.89 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1cr5A 189 10.94 b.52.2.3,d.31.1.1 26931,38465 2zbvA 263 10.95 1uarA 285 11.36 c.46.1.2,c.46.1.2 107762,107763 1h75A 81 11.52 c.47.1.1 60716 1ng2A 193 12.55 b.34.2.1,b.34.2.1 85660,85661 2mcmA 112 13.17 b.1.7.1 22207 1aboA 62 14.21 b.34.2.1 24474 2mcm 112 15.03 1h9mA 145 15.57 b.40.6.2,b.40.6.2 60833,60834 1rqpA 299 15.62 b.141.1.1,c.132.1.1 97754,97755 2p19A 149 15.71 1rhs 296 16.74 1eejA 216 16.97 c.47.1.9,d.17.3.1 33057,38071 2dyiA 162 17.97 2vidA 204 18.25 2o88A 58 18.61 1w70A 60 19.35 2gaiA 633 19.38 1cbfA 285 19.93 c.90.1.1 35587 2ikkA 173 20.61 1v7lA 163 20.79 c.8.2.1 113562 2ooiA 162 20.87 1suuA 312 21.08 b.68.10.1 99006 1gcqA 61 21.28 b.34.2.1 60434 1gvhA 396 21.44 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1e0cA 271 21.71 c.46.1.2,c.46.1.2 32717,32718 1zlmA 58 22.05 2oq0A 206 24.45 2glwA 92 24.57 1bbzA 58 24.76 b.34.2.1 24477 2drmA 58 25.70 1rhsA 296 28.04 c.46.1.2,c.46.1.2 32703,32704 3c0cA 73 29.71 2j6fA 62 31.00 1wlfA 179 31.46 d.31.1.1,b.52.2.3 109396,109397 2a08A 60 31.56 2ckkA 127 31.81 1zvtA 256 33.27 1i8dA 213 33.63 b.43.4.3,b.43.4.3 61953,61954 1hd3A 62 34.75 b.34.2.1 65802 3brgC 427 34.87 1zx6A 58 35.10 1e79D 482 35.48 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1wyxA 69 36.76 1x8mA 288 37.30 b.82.1.13 109516 1iz6A 138 37.79 b.34.5.2,b.40.4.5 76976,76977 2dtr 226 38.44 1whi 122 39.39 3bwgA 239 40.22 1utiA 58 43.27 b.34.2.1 99962 1pht 85 43.28 1ep3B 262 43.52 b.43.4.2,c.25.1.3 25664,31554 1at0A 145 44.92 b.86.1.1 28374 2ak5A 64 45.38 2hcuA 213 46.19 1oebA 62 46.43 b.34.2.1 86909 1wp5A 323 46.83 b.68.10.1 114780 1v6zA 228 49.33 b.122.1.2,c.116.1.5 113551,113552 1ootA 60 49.36 b.34.2.1 93386 1at0 145 51.04 1nkiA 135 51.87 d.32.1.2 91941 1u06A 62 52.12 b.34.2.1 119404 1xxlA 239 52.49 c.66.1.41 116203 1kzlA 208 52.60 b.43.4.3,b.43.4.3 77635,77636 2qdlA 165 52.71 2egvA 229 53.48 1whiA 122 53.74 b.39.1.1 24810 2pu9B 74 54.25 1semA 58 54.94 b.34.2.1 24544 1zi0A 307 56.95 2a28A 54 57.26 1xbrA 184 57.56 b.2.5.4 22458 1aw7A 194 59.00 b.40.2.2,d.15.6.1 25164,37753 3cp0A 82 60.47 2bzyA 67 60.83 1phtA 85 60.96 b.34.2.1 24483 2eveA 157 62.57 b.122.1.8 132427 2nwiA 172 63.21 2qh0A 138 63.33 1f60A 458 63.75 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1aipA 405 64.53 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2ostA 151 65.44 2pjhB 193 66.66 1k82A 268 67.16 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1omiA 248 68.46 b.82.3.3,a.4.5.4 87079,87080 2g6fX 59 68.46 1cz4A 185 69.23 b.52.2.3,d.31.1.1 26934,38468 1hh2P 344 69.80 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1k3yA 221 70.33 a.45.1.1,c.47.1.5 77245,77246 1va0A 239 70.84 c.90.1.1 119899 2e12A 101 74.72 1q46A 175 77.75 a.60.14.1,b.40.4.5 111594,111595 1gycA 499 80.18 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1kl9A 182 81.13 a.60.14.1,b.40.4.5 111574,111575 1b5fA 239 82.45 b.50.1.2 26836 2ggrA 76 82.89 2gncA 60 84.16 8tlnE 316 88.91 d.92.1.2 59075 2ouaA 188 89.61