# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.47e-10		
2gcxA	75	8.91e-10		
1fx7A	230	0.000151	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.000408		
2dtrA	226	0.01077	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1bi0	226	0.01099		
2qq9A	226	0.02113		
1qw1A	121	0.04690		
1bymA	97	1.108	b.34.1.2	24458
1va0A	239	3.688	c.90.1.1	119899
1pjzA	203	8.519	c.66.1.36	94794
1r9cA	139	12.78	d.32.1.2	97255
2c81A	418	13.84		
1cbfA	285	16.31	c.90.1.1	35587
3bn1A	373	20.63		
1e0cA	271	20.97	c.46.1.2,c.46.1.2	32717,32718
1h9fA	57	21.38	a.140.1.1	60826
1b9hA	388	24.20	c.67.1.4	34488
1o69A	394	24.30	c.67.1.4	92560
1pjqA	457	27.09	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1jeiA	53	27.27	a.140.1.1	62918
2ooiA	162	32.23		
1opd	85	32.73		
1m6nA	802	33.05	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
2ogeA	399	37.02		
1eejA	216	40.53	c.47.1.9,d.17.3.1	33057,38071
1vekA	84	40.68	a.5.2.1	113636
2b4uA	335	41.94		
2qwvA	208	43.40		
1r1gA	31	45.44	g.3.7.2	96816
1mdoA	393	46.30	c.67.1.4	79013
1q2kA	31	47.03	g.3.7.2	95630
1y8xB	98	47.33		
1ve2A	235	48.90	c.90.1.1	120008
2j0nA	200	49.09	a.250.1.1	137899
1xw3A	110	53.35		
1d1gA	168	53.77	c.71.1.1	34889
1pch	88	54.37		
1rhsA	296	55.62	c.46.1.2,c.46.1.2	32703,32704
1v95A	130	58.74	c.51.1.1	108435
1xdnA	277	60.54	d.142.2.4	115168
1nkrA	201	61.15	b.1.1.4,b.1.1.4	21799,21800
1wohA	305	65.61	c.42.1.1	109446
1opdA	85	66.10	d.94.1.1	40560
1o6aA	96	69.32	b.139.1.1	92562
1gutA	68	69.92	b.40.6.1	65576
1vg5A	73	69.95	a.5.2.1	113640
1yfbA	59	71.57	b.129.1.3	123057
3b7cA	122	72.01		
1ktbA	405	72.63	b.71.1.1,c.1.8.1	72960,72961
2fjtA	182	74.20		
2ikkA	173	74.38		
1fr3A	67	75.19	b.40.6.1	25436
1x8mA	288	76.57	b.82.1.13	109516
1lf2A	331	77.67	b.50.1.2	77914
2oggA	152	78.51		
2bwjA	199	78.57		
1pchA	88	78.91	d.94.1.1	40564
1z0rA	53	81.11	b.129.1.3	124326
1pgyA	47	83.38	a.5.2.1	94696
1ptfA	88	85.57	d.94.1.1	40549
3cnvA	162	85.71		
2pz0A	252	86.01		
1z3eB	73	89.55	a.60.3.1	124401