# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.27e-10		
2gcxA	75	6.40e-10		
1fx7A	230	0.000152	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.001256		
2qq9A	226	0.008002		
1bi0	226	0.008601		
2dtrA	226	0.01258	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.02622		
1bymA	97	3.708	b.34.1.2	24458
1va0A	239	4.065	c.90.1.1	119899
1pjzA	203	4.415	c.66.1.36	94794
2c81A	418	7.473		
3bn1A	373	15.25		
1o69A	394	15.52	c.67.1.4	92560
1b9hA	388	21.13	c.67.1.4	34488
1r9cA	139	25.59	d.32.1.2	97255
2b4uA	335	25.60		
1mdoA	393	25.94	c.67.1.4	79013
1jeiA	53	30.59	a.140.1.1	62918
2ogeA	399	31.50		
1h9fA	57	34.48	a.140.1.1	60826
1gjjA	168	38.65	a.140.1.1,a.140.1.1	83291,83292
1q2kA	31	40.44	g.3.7.2	95630
1cj3A	392	43.78	c.3.1.2,d.16.1.2	30347,37878
2bwjA	199	46.90		
1eejA	216	49.15	c.47.1.9,d.17.3.1	33057,38071
1e0cA	271	49.95	c.46.1.2,c.46.1.2	32717,32718
1pch	88	50.86		
1m6nA	802	52.56	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
2ooiA	162	52.93		
1y8xB	98	53.79		
1opd	85	54.70		
1gutA	68	55.00	b.40.6.1	65576
2aznA	219	58.93	c.71.1.2	127608
1v95A	130	59.28	c.51.1.1	108435
1pjqA	457	59.57	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1xw3A	110	64.57		
1wc2A	181	64.94		
1pchA	88	69.49	d.94.1.1	40564
1d1gA	168	71.93	c.71.1.1	34889
1z3eB	73	72.03	a.60.3.1	124401
1vekA	84	75.96	a.5.2.1	113636
2dsjA	423	76.71		
1xdnA	277	77.34	d.142.2.4	115168
1opdA	85	77.97	d.94.1.1	40560
2rccA	346	79.15		
1fwkA	296	82.54	d.14.1.5,d.58.26.1	37576,39398
1pgyA	47	87.08	a.5.2.1	94696
1a7aA	432	89.35	c.2.1.4,c.23.12.3	30104,31364
1lbqA	362	89.74	c.92.1.1	77877