# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	9.50e-10		
2gcxA	75	5.35e-09		
1fx7A	230	0.000497	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.002108		
2qq9A	226	0.01384		
1bi0	226	0.01473		
2dtrA	226	0.02462	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.03850		
1va0A	239	4.607	c.90.1.1	119899
1bymA	97	5.329	b.34.1.2	24458
1pjzA	203	9.607	c.66.1.36	94794
1cbfA	285	14.53	c.90.1.1	35587
2c81A	418	15.74		
1o69A	394	17.07	c.67.1.4	92560
1b9hA	388	18.10	c.67.1.4	34488
1r9cA	139	24.68	d.32.1.2	97255
2b4uA	335	27.82		
1eejA	216	30.65	c.47.1.9,d.17.3.1	33057,38071
3bn1A	373	33.41		
2ogeA	399	37.68		
2ooiA	162	38.05		
1q2kA	31	38.96	g.3.7.2	95630
1h9fA	57	39.70	a.140.1.1	60826
1vekA	84	41.57	a.5.2.1	113636
1jeiA	53	43.83	a.140.1.1	62918
1gjjA	168	43.95	a.140.1.1,a.140.1.1	83291,83292
2dsjA	423	44.05		
1rhsA	296	44.14	c.46.1.2,c.46.1.2	32703,32704
1mdoA	393	48.16	c.67.1.4	79013
1pswA	348	48.80	c.87.1.7	88287
1xw3A	110	53.33		
2j0nA	200	61.18	a.250.1.1	137899
1lb2B	84	62.82	a.60.3.1	77871
2p19A	149	65.10		
1e0cA	271	65.22	c.46.1.2,c.46.1.2	32717,32718
1fwkA	296	66.65	d.14.1.5,d.58.26.1	37576,39398
1pjqA	457	67.08	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1v95A	130	71.03	c.51.1.1	108435
2bwjA	199	72.81		
1wohA	305	74.04	c.42.1.1	109446
1m6nA	802	74.63	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1opd	85	78.82		
2vluA	122	79.52		
2pkeA	251	80.36		
2inbA	140	80.88		
3bwgA	239	81.71		
1o6aA	96	83.27	b.139.1.1	92562
1gutA	68	84.29	b.40.6.1	65576
1lf2A	331	87.20	b.50.1.2	77914
1z3eB	73	87.33	a.60.3.1	124401
2hmvA	144	87.35	c.2.1.9	136615
1qmgA	524	87.60	a.100.1.2,c.2.1.6	18785,30182
1cj3A	392	89.51	c.3.1.2,d.16.1.2	30347,37878