# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.31e-10		
2gcxA	75	1.36e-09		
1fx7A	230	0.000252	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.001342		
1bi0	226	0.008619		
2qq9A	226	0.009183		
2dtrA	226	0.01204	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.02522		
1va0A	239	3.301	c.90.1.1	119899
1bymA	97	3.639	b.34.1.2	24458
1pjzA	203	6.106	c.66.1.36	94794
1r9cA	139	11.15	d.32.1.2	97255
1cbfA	285	14.40	c.90.1.1	35587
2c81A	418	21.89		
1o69A	394	25.38	c.67.1.4	92560
1b9hA	388	25.53	c.67.1.4	34488
1h9fA	57	27.10	a.140.1.1	60826
1jeiA	53	28.46	a.140.1.1	62918
1gjjA	168	30.22	a.140.1.1,a.140.1.1	83291,83292
2j0nA	200	33.37	a.250.1.1	137899
1q2kA	31	33.91	g.3.7.2	95630
2ooiA	162	34.17		
1pjqA	457	40.03	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1vekA	84	41.56	a.5.2.1	113636
1wc2A	181	46.22		
3bn1A	373	47.89		
2bwjA	199	52.24		
2b4uA	335	52.43		
2dsjA	423	54.56		
2ogeA	399	55.18		
1pswA	348	56.68	c.87.1.7	88287
1eejA	216	57.66	c.47.1.9,d.17.3.1	33057,38071
1m6nA	802	59.16	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1opd	85	60.28		
1e0cA	271	68.33	c.46.1.2,c.46.1.2	32717,32718
3bwgA	239	68.61		
1rhsA	296	71.32	c.46.1.2,c.46.1.2	32703,32704
2qwvA	208	71.36		
1mdoA	393	73.61	c.67.1.4	79013
1ve2A	235	74.07	c.90.1.1	120008
2oolA	337	74.68		
1xw3A	110	75.68		
2vluA	122	75.95		
1v95A	130	76.30	c.51.1.1	108435
1lb2B	84	78.96	a.60.3.1	77871
2o9cA	342	79.73		
2p19A	149	85.92		
1qmgA	524	86.08	a.100.1.2,c.2.1.6	18785,30182
1wohA	305	87.52	c.42.1.1	109446
1opdA	85	88.66	d.94.1.1	40560
3bhdA	234	89.48