# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.80e-11		
2gcxA	75	1.44e-10		
1fx7A	230	0.000202	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.000886		
2qq9A	226	0.006052		
1bi0	226	0.009145		
2dtrA	226	0.01089	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.02069		
1bymA	97	1.605	b.34.1.2	24458
1pjzA	203	3.739	c.66.1.36	94794
1va0A	239	6.465	c.90.1.1	119899
2dsjA	423	13.31		
2c81A	418	15.70		
1h9fA	57	16.60	a.140.1.1	60826
1jeiA	53	18.65	a.140.1.1	62918
1r9cA	139	19.39	d.32.1.2	97255
3bn1A	373	30.64		
1o69A	394	35.39	c.67.1.4	92560
1b9hA	388	40.74	c.67.1.4	34488
1mdoA	393	41.44	c.67.1.4	79013
1vekA	84	42.01	a.5.2.1	113636
1xw3A	110	43.29		
2b4uA	335	43.44		
1cj3A	392	47.27	c.3.1.2,d.16.1.2	30347,37878
1r1gA	31	47.38	g.3.7.2	96816
1v95A	130	49.17	c.51.1.1	108435
1q2kA	31	50.27	g.3.7.2	95630
2ooiA	162	54.19		
1wohA	305	55.54	c.42.1.1	109446
1gjjA	168	55.80	a.140.1.1,a.140.1.1	83291,83292
1lbqA	362	55.90	c.92.1.1	77877
1y8xB	98	57.69		
2j0nA	200	58.44	a.250.1.1	137899
2ogeA	399	59.18		
1m6nA	802	60.47	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1wc2A	181	60.64		
1wmjA	130	66.48		
1pjqA	457	66.92	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2aznA	219	67.92	c.71.1.2	127608
1e0cA	271	73.96	c.46.1.2,c.46.1.2	32717,32718
1z3eB	73	75.92	a.60.3.1	124401
2bwjA	199	76.50		
1lb2B	84	85.38	a.60.3.1	77871
1cbfA	285	85.38	c.90.1.1	35587