# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.46e-10		
2gcxA	75	3.83e-10		
1fx7A	230	0.000155	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.002596		
2qq9A	226	0.006631		
2dtrA	226	0.008907	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1bi0	226	0.009640		
1qw1A	121	0.01352		
1pjzA	203	2.930	c.66.1.36	94794
1bymA	97	3.577	b.34.1.2	24458
1va0A	239	6.999	c.90.1.1	119899
2c81A	418	9.192		
1h9fA	57	11.97	a.140.1.1	60826
1vekA	84	16.40	a.5.2.1	113636
1r9cA	139	18.25	d.32.1.2	97255
1y8xB	98	20.24		
3bn1A	373	23.57		
1b9hA	388	23.85	c.67.1.4	34488
1o69A	394	25.23	c.67.1.4	92560
1jeiA	53	27.11	a.140.1.1	62918
1gjjA	168	29.05	a.140.1.1,a.140.1.1	83291,83292
1opd	85	32.08		
1pch	88	34.90		
2dsjA	423	35.82		
1mdoA	393	37.70	c.67.1.4	79013
2ogeA	399	39.60		
1gutA	68	41.78	b.40.6.1	65576
1q2kA	31	43.07	g.3.7.2	95630
1v95A	130	45.04	c.51.1.1	108435
2j0nA	200	46.70	a.250.1.1	137899
1pchA	88	50.15	d.94.1.1	40564
1z3eB	73	51.09	a.60.3.1	124401
2ooiA	162	56.83		
1xw3A	110	59.97		
1opdA	85	60.09	d.94.1.1	40560
1pjqA	457	61.39	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1fwkA	296	62.99	d.14.1.5,d.58.26.1	37576,39398
1ptfA	88	64.13	d.94.1.1	40549
1r1gA	31	66.98	g.3.7.2	96816
1lb2B	84	67.87	a.60.3.1	77871
1e0cA	271	69.89	c.46.1.2,c.46.1.2	32717,32718
1fr3A	67	71.62	b.40.6.1	25436
1ptf	88	71.68		
1rhsA	296	82.30	c.46.1.2,c.46.1.2	32703,32704
2qh8A	302	84.65		
2nygA	273	84.94		
2rccA	346	85.18		
1x8mA	288	89.17	b.82.1.13	109516
1vg5A	73	89.36	a.5.2.1	113640
1cj3A	392	89.70	c.3.1.2,d.16.1.2	30347,37878