# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 4.22e-12 2h3jA 75 4.56e-12 1fx7A 230 2.12e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 5.56e-05 2dtrA 226 0.000164 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.002406 1j48A 110 1.356 b.1.7.1 84112 1zc1A 208 4.013 3bn1A 373 4.286 1rhsA 296 4.350 c.46.1.2,c.46.1.2 32703,32704 2c81A 418 5.043 1rhs 296 5.230 1uarA 285 5.322 c.46.1.2,c.46.1.2 107762,107763 1o69A 394 5.686 c.67.1.4 92560 1y8xB 98 6.597 2ogeA 399 7.574 1opdA 85 8.409 d.94.1.1 40560 2nygA 273 8.443 1vekA 84 8.795 a.5.2.1 113636 1pchA 88 10.73 d.94.1.1 40564 2aotA 292 11.93 c.66.1.19 127098 2zgwA 235 12.19 2egxA 269 12.41 2p19A 149 13.11 1ptfA 88 13.12 d.94.1.1 40549 1e0cA 271 14.03 c.46.1.2,c.46.1.2 32717,32718 2okfA 140 14.89 2fa1A 160 14.99 d.190.1.2 133182 1o6aA 96 16.17 b.139.1.1 92562 1h75A 81 16.88 c.47.1.1 60716 1fqtA 112 17.96 b.33.1.1 24441 2fjtA 182 18.45 2f4lA 297 18.55 b.23.3.1 132927 3cnvA 162 20.07 1k0wA 231 20.26 c.74.1.1 77220 2eayA 233 20.42 1nrwA 288 22.03 c.108.1.10 86128 1tl9A 339 22.59 d.3.1.3 112505 2ikkA 173 22.85 2inbA 140 23.01 2ooiA 162 24.40 1nf2A 268 24.89 c.108.1.10 91849 1gutA 68 24.97 b.40.6.1 65576 2ftxB 64 26.05 d.300.1.2 134086 1pch 88 26.18 1i8dA 213 28.30 b.43.4.3,b.43.4.3 61953,61954 2obfA 289 28.65 2o55A 258 30.10 1gsjA 258 30.13 c.73.1.2 70397 1z3eB 73 30.70 a.60.3.1 124401 1vg5A 73 31.38 a.5.2.1 113640 1g8kB 133 33.58 b.33.1.1 24435 2p4zA 284 33.78 1h9mA 145 34.13 b.40.6.2,b.40.6.2 60833,60834 1vavA 222 34.84 b.29.1.18 108472 1sphA 88 35.90 d.94.1.1 40544 2j6iA 364 37.98 1el6A 219 38.21 d.182.1.1 42606 1eluA 390 38.72 c.67.1.3 34434 2zbvA 263 39.04 1dv0A 47 39.86 a.5.2.1 16289 2ob3A 330 40.00 1lvmA 229 40.10 b.47.1.3 78243 2p3yA 491 41.80 2fssA 365 42.04 2acaA 189 43.10 d.63.1.2 126545 1qyrA 252 43.60 c.66.1.24 104657 1v95A 130 44.53 c.51.1.1 108435 2hnfA 133 45.34 2d1hA 109 45.43 a.4.5.50 131125 1fr3A 67 45.55 b.40.6.1 25436 1wucA 250 45.92 1kzlA 208 46.99 b.43.4.3,b.43.4.3 77635,77636 2v3mA 131 47.09 2pieA 138 48.30 3bhdA 234 48.98 1z02A 446 49.30 1ri5A 298 50.50 c.66.1.34 97502 2od0A 105 51.24 2qwvA 208 51.46 1zccA 248 53.51 c.1.18.3 124903 2yzvA 303 55.13 1qp8A 303 56.02 c.2.1.4,c.23.12.1 30092,31352 2e4qA 109 56.64 2hdeA 148 58.01 1ydgA 211 58.61 c.23.5.8 116614 1zetA 388 58.75 d.240.1.1,e.8.1.7 124997,124998 1khbA 625 58.75 c.91.1.1,c.109.1.1 68606,68607 3d64A 494 60.19 3ch0A 272 60.54 1ti6A 875 60.95 b.52.2.2,c.81.1.1 106974,106975 2cukA 311 61.47 2aouA 292 61.68 c.66.1.19 127100 1mr7A 209 63.09 b.81.1.3 91430 2dx0A 138 63.55 2pz0A 252 65.30 1o9yA 84 66.50 b.139.1.1 92692 3c0dA 119 66.78 2dbqA 334 68.13 2oogA 287 68.26 3cq9A 227 70.17 2g8jA 339 70.73 d.3.1.3 134773 1wwkA 307 71.82 2bl9A 238 73.18 1ornA 226 74.98 a.96.1.1 87342 2vqeN 61 75.04 1v5rA 97 75.68 d.82.4.1 119854 2uubN 61 76.02 g.39.1.7 139945 2if1A 126 76.06 d.64.1.1 39547 1gdhA 320 76.77 c.2.1.4,c.23.12.1 30095,31355 2jmwA 86 76.87 1fjgN 61 76.91 g.39.1.7 45154 1vd6A 224 76.93 c.1.18.3 119991 2g29A 417 77.55 2oqaA 241 78.29 1va0A 239 79.24 c.90.1.1 119899 2j85A 122 79.91 d.321.1.1 138133 2a5lA 200 79.94 c.23.5.8 126176 2iq1A 274 80.80 1eysH 259 81.42 b.41.1.1,f.23.10.1 25484,43517 1z2mA 155 81.52 d.15.1.1,d.15.1.1 124387,124388 1xdnA 277 82.59 d.142.2.4 115168 1mx3A 347 82.60 c.2.1.4,c.23.12.1 79638,79639 2ev1A 222 84.04 1yqbA 100 84.49 d.15.1.1 123876 2eklA 313 84.74 1e4yA 214 85.80 c.37.1.1,g.41.2.1 31901,45181 1cbfA 285 85.96 c.90.1.1 35587 1im8A 244 86.44 c.66.1.14 66212 1sc6A 404 86.46 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1l3iA 192 86.82 c.66.1.22 77676 1e19A 314 88.07 c.73.1.1 34967 2cl5A 221 88.84 c.66.1.1 130570 2gcgA 330 89.63