# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.42e-10		
2gcxA	75	8.56e-10		
2dtrA	226	0.000552	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001183		
1fx7A	230	0.001600	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.008268		
1ri5A	298	4.845	c.66.1.34	97502
1o69A	394	6.660	c.67.1.4	92560
2ogeA	399	7.015		
2c81A	418	8.952		
1rhsA	296	12.34	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	14.55		
2gkgA	127	17.54		
1j48A	110	19.56	b.1.7.1	84112
1nrwA	288	22.49	c.108.1.10	86128
1uarA	285	26.60	c.46.1.2,c.46.1.2	107762,107763
2jbaA	127	27.44		
1h75A	81	27.53	c.47.1.1	60716
1va0A	239	30.26	c.90.1.1	119899
2d1hA	109	31.07	a.4.5.50	131125
1q0uA	219	31.89	c.37.1.19	95512
1z3eB	73	32.25	a.60.3.1	124401
1e0cA	271	33.16	c.46.1.2,c.46.1.2	32717,32718
1nf2A	268	34.09	c.108.1.10	91849
1cbfA	285	34.43	c.90.1.1	35587
2bl9A	238	35.29		
2aouA	292	36.18	c.66.1.19	127100
1b00A	127	36.19	c.23.1.1	31122
1ve2A	235	36.20	c.90.1.1	120008
3bn1A	373	40.28		
1vekA	84	41.95	a.5.2.1	113636
1kpgA	287	43.71	c.66.1.18	68735
2v3mA	131	45.63		
1fqtA	112	46.07	b.33.1.1	24441
2fjtA	182	46.56		
1y8xB	98	46.61		
2j85A	122	47.17	d.321.1.1	138133
2bb3A	221	48.94	c.90.1.1	128257
2aotA	292	53.71	c.66.1.19	127098
2dsjA	423	55.24		
1p9bA	442	56.41	c.37.1.10	94385
2nygA	273	57.51		
2fa1A	160	57.55	d.190.1.2	133182
2dejA	350	59.27		
1s95A	333	62.67	d.159.1.3	105375
1xdnA	277	63.98	d.142.2.4	115168
1nt4A	391	64.42	c.60.1.2	92102
1z6nA	167	65.00	c.47.1.1	124530
2gxqA	207	65.51		
1eluA	390	65.53	c.67.1.3	34434
2qwvA	208	72.59		
1e4yA	214	72.73	c.37.1.1,g.41.2.1	31901,45181
2oggA	152	73.67		
2f4lA	297	74.43	b.23.3.1	132927
2p19A	149	75.25		
1pchA	88	75.79	d.94.1.1	40564
2fziA	206	77.89	c.71.1.1	134448
1vavA	222	78.98	b.29.1.18	108472
2pieA	138	80.65		
2z26A	347	81.56		
1zccA	248	82.12	c.1.18.3	124903
1opdA	85	83.74	d.94.1.1	40560
2h1rA	299	85.51		
1zc1A	208	85.94		
2p4zA	284	85.96		
3bmvA	683	87.03		
1k47A	337	87.55	d.14.1.5,d.58.26.4	72040,72041
1qdeA	224	89.30	c.37.1.19	32410