# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	8.39e-11		
2gcxA	75	4.32e-10		
2dtrA	226	0.000283	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.000588	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.000682		
2qq9A	226	0.005882		
1ri5A	298	8.262	c.66.1.34	97502
1o69A	394	8.862	c.67.1.4	92560
1rhsA	296	9.355	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	12.05		
2gkgA	127	12.54		
1j48A	110	13.35	b.1.7.1	84112
2c81A	418	14.72		
2ogeA	399	15.53		
2jbaA	127	19.65		
1cbfA	285	21.76	c.90.1.1	35587
1nrwA	288	23.30	c.108.1.10	86128
1q0uA	219	23.56	c.37.1.19	95512
1ve2A	235	23.96	c.90.1.1	120008
2fa1A	160	24.69	d.190.1.2	133182
2bb3A	221	24.93	c.90.1.1	128257
1b00A	127	26.55	c.23.1.1	31122
1z3eB	73	26.74	a.60.3.1	124401
1uarA	285	26.96	c.46.1.2,c.46.1.2	107762,107763
1h75A	81	28.40	c.47.1.1	60716
1va0A	239	29.20	c.90.1.1	119899
1y8xB	98	29.36		
2p19A	149	33.16		
1vekA	84	33.71	a.5.2.1	113636
1nf2A	268	34.80	c.108.1.10	91849
2d1hA	109	36.01	a.4.5.50	131125
1e0cA	271	38.71	c.46.1.2,c.46.1.2	32717,32718
2j85A	122	39.67	d.321.1.1	138133
1fqtA	112	40.28	b.33.1.1	24441
2bl9A	238	41.50		
2oggA	152	43.23		
2gxqA	207	44.76		
1pchA	88	45.02	d.94.1.1	40564
2v3mA	131	45.73		
3bmvA	683	45.88		
2pieA	138	47.95		
2ccqA	99	49.88	d.314.1.1	130252
2aouA	292	50.31	c.66.1.19	127100
1z6nA	167	51.01	c.47.1.1	124530
1f46A	140	51.28	d.129.4.1	59643
2aotA	292	52.07	c.66.1.19	127098
2egxA	269	54.43		
1opdA	85	55.35	d.94.1.1	40560
2ikkA	173	57.58		
2ob3A	330	57.74		
2fjtA	182	58.19		
2qwvA	208	58.37		
1zc1A	208	60.08		
2nygA	273	62.25		
3bn1A	373	62.88		
1xdnA	277	63.65	d.142.2.4	115168
1kpgA	287	68.77	c.66.1.18	68735
3cnvA	162	71.78		
1kmvA	186	77.05	c.71.1.1	72757
2f4lA	297	78.92	b.23.3.1	132927
1nt4A	391	80.47	c.60.1.2	92102
2dejA	350	81.77		
2ooiA	162	81.86		
1qdeA	224	82.19	c.37.1.19	32410
2qpqA	301	82.32		
2z0jA	237	84.14		
2z26A	347	85.35		
1mb3A	124	89.37	c.23.1.1	78907