# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	8.82e-11		
2gcxA	75	4.02e-10		
2dtrA	226	0.000297	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.000705		
1fx7A	230	0.000763	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.006165		
1ri5A	298	5.784	c.66.1.34	97502
2ogeA	399	7.911		
1o69A	394	7.921	c.67.1.4	92560
1rhsA	296	8.997	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	10.38		
2c81A	418	12.05		
2gkgA	127	12.13		
1j48A	110	14.67	b.1.7.1	84112
2jbaA	127	18.94		
1cbfA	285	20.95	c.90.1.1	35587
1nrwA	288	21.12	c.108.1.10	86128
1uarA	285	21.69	c.46.1.2,c.46.1.2	107762,107763
1h75A	81	23.02	c.47.1.1	60716
1b00A	127	25.29	c.23.1.1	31122
1ve2A	235	26.67	c.90.1.1	120008
1y8xB	98	30.91		
1z3eB	73	30.94	a.60.3.1	124401
1e0cA	271	31.64	c.46.1.2,c.46.1.2	32717,32718
1va0A	239	33.49	c.90.1.1	119899
2fa1A	160	35.57	d.190.1.2	133182
1nf2A	268	35.87	c.108.1.10	91849
2p19A	149	38.22		
2bb3A	221	40.63	c.90.1.1	128257
3bmvA	683	41.23		
1q0uA	219	41.77	c.37.1.19	95512
1kpgA	287	41.82	c.66.1.18	68735
2v3mA	131	42.11		
2pieA	138	42.19		
2d1hA	109	44.33	a.4.5.50	131125
2aouA	292	45.56	c.66.1.19	127100
2aotA	292	45.59	c.66.1.19	127098
2bl9A	238	45.66		
2oggA	152	45.85		
2j85A	122	48.06	d.321.1.1	138133
2dejA	350	49.18		
1pchA	88	50.31	d.94.1.1	40564
1opdA	85	51.62	d.94.1.1	40560
1vekA	84	55.25	a.5.2.1	113636
1xdnA	277	56.04	d.142.2.4	115168
1f46A	140	56.68	d.129.4.1	59643
2f4lA	297	58.58	b.23.3.1	132927
2fjtA	182	60.34		
2ccqA	99	60.84	d.314.1.1	130252
2nygA	273	61.11		
1mb3A	124	61.86	c.23.1.1	78907
1z6nA	167	63.22	c.47.1.1	124530
2qwvA	208	64.80		
2ikkA	173	66.25		
3bn1A	373	66.98		
1fqtA	112	68.71	b.33.1.1	24441
1zccA	248	71.30	c.1.18.3	124903
1zc1A	208	73.72		
1s95A	333	77.62	d.159.1.3	105375
2z26A	347	79.40		
1nt4A	391	79.85	c.60.1.2	92102
1eluA	390	81.38	c.67.1.3	34434
1i3cA	149	82.63	c.23.1.1	71112
1k47A	337	83.19	d.14.1.5,d.58.26.4	72040,72041
2ftxB	64	87.69	d.300.1.2	134086
2ob3A	330	88.22		
3cnvA	162	89.58