# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.46e-11		
2gcxA	75	1.08e-10		
2dtrA	226	0.000286	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.000341		
1fx7A	230	0.001009	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.005934		
1ri5A	298	6.566	c.66.1.34	97502
1j48A	110	13.61	b.1.7.1	84112
1rhsA	296	14.16	c.46.1.2,c.46.1.2	32703,32704
2dsjA	423	16.99		
1rhs	296	18.27		
1uarA	285	18.36	c.46.1.2,c.46.1.2	107762,107763
3bmvA	683	20.03		
1vekA	84	22.36	a.5.2.1	113636
2c81A	418	25.55		
1z3eB	73	28.97	a.60.3.1	124401
1y8xB	98	35.04		
2fa1A	160	35.57	d.190.1.2	133182
1h75A	81	36.18	c.47.1.1	60716
1cbfA	285	36.74	c.90.1.1	35587
2p19A	149	37.60		
2pieA	138	42.30		
1z6nA	167	43.12	c.47.1.1	124530
2py6A	409	45.70		
1brwA	433	47.03	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
2oggA	152	49.61		
1e0cA	271	50.24	c.46.1.2,c.46.1.2	32717,32718
1r1gA	31	52.62	g.3.7.2	96816
2bl9A	238	52.74		
2ev1A	222	54.35		
1q0uA	219	59.74	c.37.1.19	95512
1s95A	333	60.69	d.159.1.3	105375
2etjA	250	61.30	c.55.3.1	132360
2ikkA	173	62.91		
1o69A	394	63.05	c.67.1.4	92560
1ve2A	235	64.55	c.90.1.1	120008
1kpgA	287	65.95	c.66.1.18	68735
2d1hA	109	66.08	a.4.5.50	131125
2ogeA	399	69.45		
1ufwA	95	69.84	d.58.7.1	99358
3cnvA	162	70.71		
2v3mA	131	71.63		
1nrwA	288	72.28	c.108.1.10	86128
2tpt	440	73.62		
1i8dA	213	76.98	b.43.4.3,b.43.4.3	61953,61954
1va0A	239	78.41	c.90.1.1	119899
1yt8A	539	80.56	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2bb3A	221	82.78	c.90.1.1	128257
2dekA	265	83.29	c.90.1.1	131430
3bn1A	373	85.46		
1nf2A	268	87.02	c.108.1.10	91849
2ooiA	162	89.54		
2gxqA	207	89.78