# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.63e-10		
2gcxA	75	6.09e-10		
1fx7A	230	9.39e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000216		
2dtrA	226	0.001181	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.01143		
1qw1A	121	0.01319		
1bymA	97	2.753	b.34.1.2	24458
1mdoA	393	6.328	c.67.1.4	79013
2c81A	418	6.417		
1rhs	296	7.285		
1h75A	81	8.010	c.47.1.1	60716
1vkjA	285	8.779	c.37.1.5	108666
3bn1A	373	9.209		
1e0cA	271	11.38	c.46.1.2,c.46.1.2	32717,32718
1a8i	842	11.47		
1o69A	394	11.62	c.67.1.4	92560
1uarA	285	16.40	c.46.1.2,c.46.1.2	107762,107763
1b9hA	388	19.59	c.67.1.4	34488
1elqA	390	22.77	c.67.1.3	34436
2ogeA	399	25.15		
1wohA	305	26.49	c.42.1.1	109446
1ne2A	200	27.47	c.66.1.32	85586
2bb3A	221	29.22	c.90.1.1	128257
1rhsA	296	30.69	c.46.1.2,c.46.1.2	32703,32704
1eluA	390	30.79	c.67.1.3	34434
2graA	277	31.71		
2pwyA	258	32.47		
1pbeA	394	35.43	c.3.1.2,d.16.1.2	30338,37869
2h1rA	299	36.28		
1va0A	239	37.14	c.90.1.1	119899
1s68A	249	37.31	d.142.2.4	98591
1z3eB	73	41.51	a.60.3.1	124401
1cbfA	285	44.96	c.90.1.1	35587
1yemA	179	48.16	d.63.1.2	116646
2d1hA	109	49.55	a.4.5.50	131125
1xhlA	297	49.81	c.2.1.2	109591
2j85A	122	55.20	d.321.1.1	138133
1nrvA	105	56.39	d.93.1.1	86126
1sfxA	109	56.81	a.4.5.50	105505
1y8xB	98	57.76		
2z6rA	265	58.63		
1xkqA	280	60.65	c.2.1.2	115417
2dejA	350	63.17		
1jyhA	157	63.26	d.60.1.3	71956
1hrkA	359	65.23	c.92.1.1	61228
1lb2B	84	66.92	a.60.3.1	77871
2fa1A	160	68.11	d.190.1.2	133182
1kmvA	186	73.34	c.71.1.1	72757
1x8mA	288	73.44	b.82.1.13	109516
1pchA	88	74.67	d.94.1.1	40564
1z2mA	155	75.83	d.15.1.1,d.15.1.1	124387,124388
1opdA	85	78.20	d.94.1.1	40560
2vsgA	358	80.02	h.4.1.1	45780
2fjtA	182	82.26		
2azpA	318	83.07		
2rfaA	232	85.65		
2ftxB	64	87.93	d.300.1.2	134086
1wc2A	181	88.47		
2nygA	273	89.37