# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.42e-12 2gcxA 75 7.79e-12 1fx7A 230 7.55e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 0.000106 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000469 2qq9A 226 0.001343 1qw1A 121 0.003132 1bymA 97 0.8422 b.34.1.2 24458 2fa1A 160 4.129 d.190.1.2 133182 1f46A 140 4.300 d.129.4.1 59643 2hpkA 208 5.170 1p57A 114 5.474 d.170.1.2 94125 2azpA 318 6.337 2vduE 254 7.243 1h75A 81 7.881 c.47.1.1 60716 1wxxA 382 7.952 b.122.1.9,c.66.1.51 121418,121419 1gteA 1025 7.962 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2bb3A 221 9.473 c.90.1.1 128257 1xm9A 457 11.18 a.118.1.24 122142 1jc4A 148 12.40 d.32.1.4 62863 1qamA 244 13.07 c.66.1.24 34220 1zvkA 358 13.58 2qwvA 208 13.98 1rhsA 296 14.34 c.46.1.2,c.46.1.2 32703,32704 2prbA 196 14.41 2rk0A 136 14.64 3cddA 361 15.53 2r7dA 469 16.08 2q01A 497 17.38 1kjqA 391 18.25 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1eejA 216 19.75 c.47.1.9,d.17.3.1 33057,38071 1pqhA 143 20.06 b.52.2.1 95017 1mpyA 307 20.77 d.32.1.3,d.32.1.3 38508,38509 1e0cA 271 21.65 c.46.1.2,c.46.1.2 32717,32718 1t9bA 677 22.11 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2jmwA 86 22.91 2ogeA 399 22.98 2oy0A 262 23.78 1yemA 179 23.79 d.63.1.2 116646 1hg8A 349 24.03 b.80.1.3 65830 2uyoA 310 24.95 1j99A 293 25.35 c.37.1.5 71618 1k1eA 180 26.17 c.108.1.5 67995 1uby 367 26.91 2fziA 206 26.94 c.71.1.1 134448 2izzA 322 27.06 1gegA 256 29.40 c.2.1.2 29888 1fjmA 330 29.45 d.159.1.3 42082 2ywwA 149 29.89 1rhs 296 31.05 2obwA 258 31.45 2ooiA 162 32.17 1zkcA 197 32.78 b.62.1.1 125182 3cnvA 162 32.89 1go3F 107 33.04 a.60.8.2 65407 1iugA 352 33.21 c.67.1.3 90699 1z3eB 73 34.35 a.60.3.1 124401 2pkhA 148 34.55 1zowA 313 34.56 2ikkA 173 35.55 2qjcA 262 35.95 1t8hA 277 36.22 d.194.1.2 106664 2p19A 149 36.77 1nrvA 105 37.05 d.93.1.1 86126 1nj4A 363 39.35 b.105.1.1,e.3.1.1 80545,80546 2f1nA 262 40.79 d.151.1.1 132782 2pwyA 258 41.60 3cumA 302 44.07 3bamA 213 44.39 c.52.1.3 33288 2gwmA 200 44.94 1rydA 387 45.07 c.2.1.3,d.81.1.5 118801,118802 2olnA 397 45.79 1t1gA 364 46.79 c.41.1.2 106246 2h1rA 299 47.44 1xsjA 778 48.41 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2eenA 183 48.61 2pii 112 50.20 2etjA 250 51.47 c.55.3.1 132360 1z2mA 155 51.85 d.15.1.1,d.15.1.1 124387,124388 1lrzA 426 52.25 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1tkiA 321 52.75 d.144.1.7 41638 3b3qE 197 53.59 2ikqA 270 53.72 1u3wA 374 54.69 b.35.1.2,c.2.1.1 113013,113014 2hjsA 340 55.52 c.2.1.3,d.81.1.1 136547,136548 1wrbA 253 56.60 c.37.1.19 121192 1z7yA 322 57.46 c.79.1.1 124679 1pbeA 394 57.83 c.3.1.2,d.16.1.2 30338,37869 2c9hA 444 57.83 1wohA 305 58.61 c.42.1.1 109446 1u9iA 519 59.26 c.37.1.11,c.37.1.11 119637,119638 1ty0A 211 60.82 b.40.2.2,d.15.6.1 107440,107441 1fnyA 237 61.09 b.29.1.1 59920 1sjgA 112 62.35 b.33.1.1 105647 2nygA 273 62.63 1eluA 390 62.69 c.67.1.3 34434 2f8yA 223 62.73 2q3wA 111 63.34 b.33.1.1 139813 1ve2A 235 64.50 c.90.1.1 120008 1u0tA 307 64.72 e.52.1.1 107567 2okfA 140 66.12 2fjtA 182 66.40 2basA 431 66.44 c.1.33.1,d.110.6.2 128244,128245 2qxvA 361 66.52 2oggA 152 67.65 2i44A 324 68.19 1np3A 338 68.31 a.100.1.2,c.2.1.6 85946,85947 2c07A 285 68.56 c.2.1.2 129577 1lkdA 297 70.36 d.32.1.3,d.32.1.3 78059,78060 2rfqA 394 70.86 3cq9A 227 71.13 2f1kA 279 73.32 a.100.1.12,c.2.1.6 132772,132773 2dt4A 143 74.07 1im8A 244 74.59 c.66.1.14 66212 2depA 356 74.66 1eudA 311 74.72 c.2.1.8,c.23.4.1 30312,31140 1xksA 450 75.13 b.69.14.1 115422 1ofgA 381 75.28 c.2.1.3,d.81.1.5 30064,39979 1scuA 288 76.16 c.2.1.8,c.23.4.1 30307,31135 2epgA 487 76.91 1hbq 183 77.69 1kqfB 294 77.87 d.58.1.5,f.23.22.1 75900,75901 1va0A 239 78.36 c.90.1.1 119899 2o2yA 349 78.55 c.2.1.2 138894 1qqcA 773 79.15 c.55.3.5,e.8.1.1 33724,43013 1zc1A 208 79.89 2d1hA 109 80.07 a.4.5.50 131125 1u32A 293 80.32 d.159.1.3 107631 3bwgA 239 81.84 1zzmA 259 82.71 c.1.9.12 125911 1g0uL 241 83.54 d.153.1.4 41894 2cb0A 333 83.85 1sfxA 109 84.42 a.4.5.50 105505 1nxzA 246 84.91 b.122.1.2,c.116.1.5 86391,86392 1lb2B 84 88.01 a.60.3.1 77871 1t9kA 347 89.04 c.124.1.5 106721 2ra6A 166 89.42 1uasA 362 89.76 b.71.1.1,c.1.8.1 88388,88389 2uvkA 357 89.77