# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.72e-12		
2gcxA	75	7.64e-12		
1fx7A	230	6.07e-06	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	3.56e-05		
2dtrA	226	9.86e-05	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.001183		
1qw1A	121	0.002428		
1bymA	97	1.597	b.34.1.2	24458
1rhs	296	1.697		
1h75A	81	3.872	c.47.1.1	60716
1rhsA	296	4.610	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	6.878	c.46.1.2,c.46.1.2	32717,32718
1mdoA	393	7.119	c.67.1.4	79013
2c81A	418	8.622		
1o69A	394	10.05	c.67.1.4	92560
1vkjA	285	10.16	c.37.1.5	108666
1ne2A	200	11.35	c.66.1.32	85586
1b9hA	388	12.16	c.67.1.4	34488
1va0A	239	13.74	c.90.1.1	119899
1cbfA	285	14.00	c.90.1.1	35587
1wohA	305	15.91	c.42.1.1	109446
1a8i	842	17.80		
1elqA	390	20.86	c.67.1.3	34436
1uarA	285	20.92	c.46.1.2,c.46.1.2	107762,107763
3bn1A	373	21.44		
2ogeA	399	27.14		
1s68A	249	30.02	d.142.2.4	98591
1pjqA	457	30.26	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1z3eB	73	32.12	a.60.3.1	124401
2j85A	122	32.66	d.321.1.1	138133
2h1rA	299	33.16		
2graA	277	35.80		
3cnvA	162	36.61		
2fa1A	160	37.94	d.190.1.2	133182
1z2mA	155	38.14	d.15.1.1,d.15.1.1	124387,124388
2pwyA	258	38.78		
1hrkA	359	44.05	c.92.1.1	61228
2ikkA	173	45.11		
2px2A	269	45.28		
1nrvA	105	45.50	d.93.1.1	86126
2d1hA	109	48.79	a.4.5.50	131125
1ve2A	235	49.87	c.90.1.1	120008
1x8mA	288	51.46	b.82.1.13	109516
1eluA	390	54.39	c.67.1.3	34434
1sfxA	109	55.27	a.4.5.50	105505
1y56A	493	56.14		
2z0jA	237	56.15		
2pkhA	148	56.44		
1vekA	84	57.50	a.5.2.1	113636
2qwvA	208	59.75		
1jyhA	157	61.02	d.60.1.3	71956
2z6rA	265	62.59		
1zccA	248	63.02	c.1.18.3	124903
2p19A	149	65.25		
1lb2B	84	67.51	a.60.3.1	77871
2nygA	273	67.63		
2bb3A	221	70.67	c.90.1.1	128257
2azpA	318	71.36		
1opdA	85	71.55	d.94.1.1	40560
1pchA	88	71.58	d.94.1.1	40564
2pieA	138	72.23		
2e5vA	472	72.36		
1wc2A	181	76.10		
2oggA	152	76.26		
1zc1A	208	76.34		
2fziA	206	77.09	c.71.1.1	134448
2bwbA	46	77.49	a.5.2.1	129329
1mq4A	272	78.43	d.144.1.7	91391
3c85A	183	79.29		
2vsgA	358	80.41	h.4.1.1	45780
1f46A	140	82.40	d.129.4.1	59643
2eenA	183	83.29		
3bwgA	239	84.92		
2ooiA	162	85.61		
2o55A	258	88.59