# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.98e-11		
2gcxA	75	4.89e-11		
1fx7A	230	7.69e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000121		
2dtrA	226	0.000387	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.004278		
2dtr	226	0.004506		
1bymA	97	0.5455	b.34.1.2	24458
1rhs	296	7.968		
2c81A	418	8.357		
1h75A	81	8.476	c.47.1.1	60716
1mdoA	393	12.01	c.67.1.4	79013
3bn1A	373	15.17		
1e0cA	271	15.54	c.46.1.2,c.46.1.2	32717,32718
1uarA	285	19.65	c.46.1.2,c.46.1.2	107762,107763
1wohA	305	20.67	c.42.1.1	109446
1vkjA	285	21.24	c.37.1.5	108666
1rhsA	296	23.30	c.46.1.2,c.46.1.2	32703,32704
1elqA	390	30.05	c.67.1.3	34436
1hrkA	359	31.29	c.92.1.1	61228
2pwyA	258	32.67		
2ogeA	399	33.83		
1z3eB	73	36.15	a.60.3.1	124401
2h1rA	299	38.13		
1a8i	842	39.94		
1ne2A	200	41.11	c.66.1.32	85586
1y8xB	98	46.53		
2z6rA	265	46.64		
2bb3A	221	49.62	c.90.1.1	128257
3cnvA	162	51.38		
1o69A	394	52.33	c.67.1.4	92560
1eluA	390	52.61	c.67.1.3	34434
2fa1A	160	52.71	d.190.1.2	133182
1wc2A	181	53.70		
1b9hA	388	55.52	c.67.1.4	34488
1pbeA	394	55.61	c.3.1.2,d.16.1.2	30338,37869
1z2mA	155	57.59	d.15.1.1,d.15.1.1	124387,124388
1sfxA	109	57.60	a.4.5.50	105505
1cbfA	285	57.74	c.90.1.1	35587
1r1gA	31	59.39	g.3.7.2	96816
2py6A	409	60.12		
2ev1A	222	61.11		
2etjA	250	61.71	c.55.3.1	132360
1x8mA	288	69.84	b.82.1.13	109516
1va0A	239	70.85	c.90.1.1	119899
2yvlA	248	73.23		
1xkqA	280	74.07	c.2.1.2	115417
2graA	277	77.48		
2px2A	269	78.12		
2vsgA	358	80.61	h.4.1.1	45780
2pieA	138	83.15		
1xhlA	297	84.79	c.2.1.2	109591
2oggA	152	87.01		
2d1hA	109	88.48	a.4.5.50	131125
2pkhA	148	88.72		
1lb2B	84	89.66	a.60.3.1	77871