# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	2.05e-10		
2h3jA	75	2.10e-10		
1fx7A	230	3.59e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000244		
2dtrA	226	0.000519	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.003295		
2dtr	226	0.02277		
1bymA	97	1.705	b.34.1.2	24458
2c81A	418	5.424		
1mdoA	393	6.690	c.67.1.4	79013
1h75A	81	8.099	c.47.1.1	60716
1rhs	296	8.591		
3bn1A	373	9.915		
1elqA	390	13.27	c.67.1.3	34436
1e0cA	271	14.55	c.46.1.2,c.46.1.2	32717,32718
1y8xB	98	18.81		
1uarA	285	20.10	c.46.1.2,c.46.1.2	107762,107763
1eluA	390	20.33	c.67.1.3	34434
1ne2A	200	21.74	c.66.1.32	85586
1rhsA	296	24.12	c.46.1.2,c.46.1.2	32703,32704
2ogeA	399	25.65		
1o69A	394	26.72	c.67.1.4	92560
1b9hA	388	27.96	c.67.1.4	34488
1hrkA	359	28.32	c.92.1.1	61228
2qh8A	302	31.35		
1z2mA	155	33.61	d.15.1.1,d.15.1.1	124387,124388
1wohA	305	36.94	c.42.1.1	109446
1z3eB	73	38.65	a.60.3.1	124401
2px2A	269	41.62		
1vkjA	285	42.26	c.37.1.5	108666
2ev1A	222	45.01		
2pwyA	258	48.02		
2nygA	273	49.42		
2vsgA	358	50.09	h.4.1.1	45780
1pchA	88	50.89	d.94.1.1	40564
1vekA	84	54.03	a.5.2.1	113636
1opdA	85	55.21	d.94.1.1	40560
1dv0A	47	57.99	a.5.2.1	16289
1ptfA	88	59.12	d.94.1.1	40549
1jyhA	157	59.22	d.60.1.3	71956
2dejA	350	62.98		
1x8mA	288	63.14	b.82.1.13	109516
1cbfA	285	64.07	c.90.1.1	35587
1sfxA	109	64.30	a.4.5.50	105505
1xkqA	280	67.55	c.2.1.2	115417
1pch	88	67.91		
1xhlA	297	67.96	c.2.1.2	109591
3cnvA	162	68.33		
2yvlA	248	70.08		
2fa1A	160	74.20	d.190.1.2	133182
1ydgA	211	74.85	c.23.5.8	116614
1pbeA	394	75.78	c.3.1.2,d.16.1.2	30338,37869
1zc1A	208	76.00		
1a8i	842	76.52		
2graA	277	77.08		
1wc2A	181	77.33		
2z6rA	265	78.04		
2h1rA	299	78.19		
1mq4A	272	81.62	d.144.1.7	91391
1v5tA	90	82.85	d.15.1.1	108385
1nrvA	105	82.86	d.93.1.1	86126
1sphA	88	85.76	d.94.1.1	40544
2d1hA	109	87.35	a.4.5.50	131125
1vg5A	73	88.06	a.5.2.1	113640
1ptf	88	88.14