# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	7.81e-10		
2gcxA	75	8.08e-10		
1fx7A	230	8.88e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000371		
2dtrA	226	0.001172	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.005696		
2dtr	226	0.006043		
1bymA	97	3.785	b.34.1.2	24458
1rhs	296	7.332		
2c81A	418	9.97		
1h75A	81	10.82	c.47.1.1	60716
1mdoA	393	11.50	c.67.1.4	79013
3bn1A	373	11.83		
1e0cA	271	11.96	c.46.1.2,c.46.1.2	32717,32718
1elqA	390	12.99	c.67.1.3	34436
1uarA	285	16.38	c.46.1.2,c.46.1.2	107762,107763
1o69A	394	16.42	c.67.1.4	92560
1ne2A	200	17.18	c.66.1.32	85586
1y8xB	98	17.89		
1eluA	390	18.60	c.67.1.3	34434
1rhsA	296	21.35	c.46.1.2,c.46.1.2	32703,32704
1a8i	842	32.88		
1z3eB	73	33.23	a.60.3.1	124401
1b9hA	388	34.18	c.67.1.4	34488
1vkjA	285	36.50	c.37.1.5	108666
3cnvA	162	38.95		
1hrkA	359	39.75	c.92.1.1	61228
2ogeA	399	40.08		
2pwyA	258	41.10		
1cbfA	285	42.45	c.90.1.1	35587
2fa1A	160	44.52	d.190.1.2	133182
2px2A	269	45.32		
2bb3A	221	45.54	c.90.1.1	128257
2nygA	273	46.98		
1z2mA	155	47.10	d.15.1.1,d.15.1.1	124387,124388
1r1gA	31	51.95	g.3.7.2	96816
1s68A	249	51.96	d.142.2.4	98591
2py6A	409	55.33		
1wohA	305	57.25	c.42.1.1	109446
1opdA	85	57.47	d.94.1.1	40560
1zccA	248	58.36	c.1.18.3	124903
1zc1A	208	61.05		
2yvlA	248	61.22		
1va0A	239	62.09	c.90.1.1	119899
1sfxA	109	62.82	a.4.5.50	105505
1pchA	88	66.64	d.94.1.1	40564
2graA	277	67.00		
1xkqA	280	68.63	c.2.1.2	115417
2eayA	233	70.03		
2h1rA	299	70.23		
1dv0A	47	71.25	a.5.2.1	16289
1ptfA	88	73.51	d.94.1.1	40549
1x8mA	288	73.61	b.82.1.13	109516
1pbeA	394	76.11	c.3.1.2,d.16.1.2	30338,37869
2z6rA	265	77.78		
1mo1A	87	78.54	d.94.1.1	91363
1qamA	244	79.04	c.66.1.24	34220
1lb2B	84	79.58	a.60.3.1	77871
1yt8A	539	80.63	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2oggA	152	81.72		
2qwvA	208	83.20		
1y51A	88	83.44		
2qh8A	302	84.84		
2vsgA	358	85.08	h.4.1.1	45780
1vekA	84	86.34	a.5.2.1	113636
1opd	85	88.72