# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	8.64e-09		
2gcxA	75	9.79e-09		
2qq9A	226	0.001833		
2dtrA	226	0.004737	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.005964	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.008480		
2dtr	226	0.09238		
1bymA	97	5.325	b.34.1.2	24458
1rhs	296	23.45		
1uarA	285	38.68	c.46.1.2,c.46.1.2	107762,107763
1z3eB	73	49.40	a.60.3.1	124401
1h75A	81	59.07	c.47.1.1	60716
2qh8A	302	63.01		
1e0cA	271	66.88	c.46.1.2,c.46.1.2	32717,32718
1zelA	298	68.78		
1vkjA	285	71.29	c.37.1.5	108666
1aru	344	73.22		
1rhsA	296	81.21	c.46.1.2,c.46.1.2	32703,32704
1dv0A	47	81.49	a.5.2.1	16289
2nsnA	95	83.38		
1y8xB	98	84.63