# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	5.95e-10		
2h3jA	75	8.00e-10		
2dtrA	226	0.000432	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.000781	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.001757		
1qw1A	121	0.005033		
2dtr	226	0.008987		
1bymA	97	1.168	b.34.1.2	24458
1a8i	842	3.105		
1rhs	296	3.693		
1e0cA	271	8.449	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	8.974	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	16.75	c.46.1.2,c.46.1.2	107762,107763
2vsgA	358	18.40	h.4.1.1	45780
1y8xB	98	21.83		
1qusA	322	28.36	d.2.1.6	36991
2c81A	418	29.38		
2h1rA	299	29.49		
1z2mA	155	34.18	d.15.1.1,d.15.1.1	124387,124388
1xkqA	280	40.46	c.2.1.2	115417
1z3eB	73	42.38	a.60.3.1	124401
2gfsA	372	42.46	d.144.1.7	135109
3bn1A	373	44.32		
2z6rA	265	45.21		
2py6A	409	46.75		
2yqzA	263	47.65		
1xhlA	297	49.64	c.2.1.2	109591
1wc2A	181	50.00		
1h75A	81	53.03	c.47.1.1	60716
1hrkA	359	58.01	c.92.1.1	61228
1qamA	244	59.54	c.66.1.24	34220
1kyhA	276	60.15	c.72.1.4	73222
1ne2A	200	62.30	c.66.1.32	85586
2dulA	378	63.33		
1dv0A	47	63.49	a.5.2.1	16289
1tl2A	236	65.56	b.67.1.1	27541
2qwvA	208	66.77		
1cbfA	285	68.60	c.90.1.1	35587
1s68A	249	68.98	d.142.2.4	98591
1wohA	305	71.91	c.42.1.1	109446
1tl9A	339	73.51	d.3.1.3	112505
3b9qA	302	82.96		
1va0A	239	83.12	c.90.1.1	119899
1elqA	390	88.79	c.67.1.3	34436