# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 6.97e-06 2h3jA 75 0.000188 1fx7A 230 0.005482 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.8086 1bymA 97 0.8696 b.34.1.2 24458 1dj7B 75 1.523 b.34.4.3 24598 1qw1A 121 2.267 2g6fX 59 3.200 1aboA 62 3.331 b.34.2.1 24474 2j6fA 62 3.877 1tuc 63 4.081 2pu9B 74 4.526 1gcqA 61 4.626 b.34.2.1 60434 1w70A 60 4.775 1bbzA 58 4.802 b.34.2.1 24477 2o88A 58 5.001 2ak5A 64 5.921 1zlmA 58 5.937 3c0cA 73 6.209 2a08A 60 6.526 1ng2A 193 8.019 b.34.2.1,b.34.2.1 85660,85661 1eejA 216 8.156 c.47.1.9,d.17.3.1 33057,38071 1h75A 81 8.682 c.47.1.1 60716 2bzyA 67 8.847 1hd3A 62 9.504 b.34.2.1 65802 1ootA 60 9.932 b.34.2.1 93386 2drmA 58 10.22 1j48A 110 10.51 b.1.7.1 84112 3bwgA 239 10.57 2bz8A 58 10.80 3cnvA 162 10.96 1zx6A 58 11.09 1pht 85 11.32 1qcsA 211 11.84 b.52.2.3,d.31.1.1 26927,38461 1u06A 62 12.21 b.34.2.1 119404 1cr5A 189 12.54 b.52.2.3,d.31.1.1 26931,38465 2a28A 54 13.67 1uarA 285 15.42 c.46.1.2,c.46.1.2 107762,107763 1oebA 62 15.68 b.34.2.1 86909 1utiA 58 15.74 b.34.2.1 99962 1v7lA 163 16.47 c.8.2.1 113562 1semA 58 16.53 b.34.2.1 24544 2d1xA 66 17.14 1ov3A 138 18.54 b.34.2.1,b.34.2.1 87451,87452 2heqA 84 18.75 2oggA 152 19.27 1wyxA 69 19.71 1phtA 85 19.97 b.34.2.1 24483 1rhs 296 20.54 1x2kA 68 23.33 1ug1A 92 23.34 b.34.2.1 99360 1noaA 113 23.68 b.1.7.1 22208 2pkhA 148 24.99 1uj0A 62 25.82 b.34.2.1 99449 1e0cA 271 26.04 c.46.1.2,c.46.1.2 32717,32718 2ooiA 162 27.07 2qk0A 74 27.69 1ywpA 64 29.52 1u6bA 98 29.57 d.58.7.1 107703 2gncA 60 30.45 2gaiA 633 30.99 2ggrA 76 31.79 1rhsA 296 32.30 c.46.1.2,c.46.1.2 32703,32704 2p19A 149 34.00 3cnqP 80 37.36 2ikkA 173 37.57 2nwiA 172 38.07 2egvA 229 38.44 2nysA 176 38.52 2dtr 226 40.10 1jb0E 75 41.18 b.34.4.2 62824 1wn2A 121 41.51 1uadC 99 41.63 b.1.18.18 88379 1jbwA 428 41.99 c.59.1.2,c.72.2.2 62860,62861 1zq1A 438 42.02 b.38.3.1,c.88.1.1 125489,125490 1q7sA 117 42.23 c.131.1.1 96055 1y0mA 61 44.09 1nxzA 246 44.30 b.122.1.2,c.116.1.5 86391,86392 3cp0A 82 46.64 2qtxA 71 46.65 1zuuA 58 48.82 b.34.2.1 125688 1o6aA 96 49.26 b.139.1.1 92562 2fa1A 160 51.24 d.190.1.2 133182 1wu2A 396 51.49 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1cbfA 285 52.99 c.90.1.1 35587 2id1A 130 53.53 8tlnE 316 55.47 d.92.1.2 59075 2ostA 151 56.90 1ckaA 57 58.31 b.34.2.1 24459 2de0X 526 58.58 1jeyB 565 58.80 b.131.1.2,c.62.1.4 90372,90373 1vhyA 257 58.93 b.122.1.2,c.116.1.5 100714,100715 1ruwA 69 59.83 1gcqC 70 60.24 b.34.2.1 60436 2jngA 105 62.78 2hzcA 87 68.45 1suuA 312 68.55 b.68.10.1 99006 1z9zA 60 69.65 2j05A 65 70.23 2elfA 370 72.20 2pp6A 102 72.70 2hcuA 213 72.70 1gy7A 125 75.13 d.17.4.2 70738 2mcm 112 77.36 2mcmA 112 77.85 b.1.7.1 22207 1xtyA 120 78.87 1k3yA 221 80.52 a.45.1.1,c.47.1.5 77245,77246 2vknA 70 80.91 1v6zA 228 81.04 b.122.1.2,c.116.1.5 113551,113552 1umuA 116 81.67 b.87.1.1 28382 2o31A 67 85.63 2v1qA 60 87.54 2i6vA 87 89.33