a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0462
- gi|15642825|ref|NP_227866.1|_75:154 iron(II) transport protein A [Thermotoga maritima MSB8]
- gi|148270009|ref|YP_001244469.1| FeoA family protein [Thermotoga petrophila RKU-1]
- gi|4980536|gb|AAD35144.1|AE001692_1 iron(II) transport protein A [Thermotoga maritima MSB8]
- gi|147735553|gb|ABQ46893.1| FeoA family protein [Thermotoga petrophila RKU-1]
- gi|170288693|ref|YP_001738931.1|_75:154 FeoA family protein [Thermotoga sp. RQ2]
- gi|170176196|gb|ACB09248.1| FeoA family protein [Thermotoga sp. RQ2]
- gi|150021610|ref|YP_001306964.1|_74:141 FeoA family protein [Thermosipho melanesiensis BI429]
- gi|149794131|gb|ABR31579.1| FeoA family protein [Thermosipho melanesiensis BI429]
- gi|157363427|ref|YP_001470194.1|_79:143 FeoA family protein [Thermotoga lettingae TMO]
- gi|157314031|gb|ABV33130.1| FeoA family protein [Thermotoga lettingae TMO]
- gi|104162031|emb|CAJ75739.1|_80:148 Fe2+ transport system protein [uncultured Thermotogales bacterium]
- gi|160902429|ref|YP_001568010.1|_86:149 FeoA family protein [Petrotoga mobilis SJ95]
- gi|160360073|gb|ABX31687.1| FeoA family protein [Petrotoga mobilis SJ95]

              10        20        30        40                50       
              |         |         |         |                 |       
   1 GGELPLILADDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGR...R.....YYIEGREI..D
   2 GGELPLILADDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGR...R.....YYIEGREI..D
   3 GGELPLILADDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGR...R.....YYIEGREI..D
   4 DESIPLIFASDGEYEVVELCGGRMFRRKMELLGVYVGKEISVING...N.....IKLNDEVI..N
   5 -----LSNAPRGIYSVVNVIGGRFFKDKMAQIGVENGSIVEVIKPf..L.....IKTNKGTF..Q
   6 --SVPLSYATNGEYFVSIINGGMGFRERLRMVGVEVGKKITVTGNigkR.....IEINANGIrsA
   7 --------SETGKYEIIDLKGGNNFIEEMKSMGLYKGVNINLVNK...LgnriiVEVDGSKY..E


         60        70        80
         |         |         |
   1 LGYGEATKIWVRRVSDAGEESHPQK
   2 LGYGEATKIWVRRVSDAGEESHPQK
   3 LGYGEATKIWVRRVSDAGEESHPQK
   4 MGDGMKKKIILRR------------
   5 VGRGMSGRIILRRI-----------
   6 LSRGQAMRIIV--------------
   7 LGRGRAAKIFCK-------------