# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qw1A	121	5.048		
2h3jA	75	5.585		
1fx7A	230	8.198	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1bi0	226	9.162		
2cftA	298	11.16		
2gcxA	75	11.93		
2glwA	92	11.96		
1j77A	209	13.22	a.132.1.2	62674
2avxA	171	15.76		
2ooiA	162	17.20		
1ryjA	70	23.26	d.15.3.2	98104
1c8uA	285	28.12	d.38.1.3,d.38.1.3	38547,38548
2dt4A	143	31.44		
2oggA	152	32.15		
1bymA	97	32.83	b.34.1.2	24458
2fkiA	126	32.95	d.198.3.1	133657
1ktbA	405	33.97	b.71.1.1,c.1.8.1	72960,72961
1npyA	271	34.33	c.2.1.7,c.58.1.5	85995,85996
1q7lA	198	35.29	c.56.5.4	96044
1k3xA	262	35.29	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1tbuA	118	39.31	d.38.1.3	119223
2gcoA	201	41.19		
1h72C	296	41.31	d.14.1.5,d.58.26.1	60712,60713
2bitX	165	41.45	b.62.1.1	128590
1h9mA	145	41.51	b.40.6.2,b.40.6.2	60833,60834
2q78A	153	43.25		
2qq9A	226	43.73		
1wgvA	124	45.34	b.15.1.4	114624
1uekA	275	45.82	d.14.1.5,d.58.26.5	88483,88484
1vi2A	300	46.82	c.2.1.7,c.58.1.5	100726,100727
1fwkA	296	48.45	d.14.1.5,d.58.26.1	37576,39398
1ptmA	329	49.68	c.77.1.3	95104
2oq0A	206	54.43		
2pjhB	193	56.15		
1pdo	135	60.43		
1fgs	428	60.44		
2dtr	226	66.82		
1y51A	88	70.02		
1y88A	199	70.24	a.60.4.3,c.52.1.30	116560,116561
1pchA	88	70.28	d.94.1.1	40564
2feaA	236	73.98	c.108.1.20	133327
2q0oA	236	74.33		
1yndA	165	74.41	b.62.1.1	123721
2eayA	233	75.62		
2nygA	273	79.56		
1i7qB	193	80.01	c.23.16.1	61902
2pe3A	354	80.11		
1cz4A	185	82.20	b.52.2.3,d.31.1.1	26934,38468
2qh8A	302	82.66		
1gppA	237	84.08	b.86.1.2	76262
1pjjA	271	85.46	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1opdA	85	86.73	d.94.1.1	40560
1pdoA	135	86.75	c.54.1.1	33376
2z6wA	165	88.49		
1kmqA	184	88.92	c.37.1.8	84412