# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	9.529		
1fx7A	230	10.49	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2cftA	298	11.00		
2dtr	226	11.69		
1qw1A	121	13.04		
1uekA	275	14.43	d.14.1.5,d.58.26.5	88483,88484
1bi0	226	15.57		
2ooiA	162	16.98		
2gcxA	75	20.53		
2glwA	92	20.63		
1j77A	209	20.95	a.132.1.2	62674
1wgvA	124	21.17	b.15.1.4	114624
1pdo	135	21.59		
1ryjA	70	21.78	d.15.3.2	98104
2dt4A	143	26.83		
1c8uA	285	29.32	d.38.1.3,d.38.1.3	38547,38548
2oq0A	206	30.22		
1npyA	271	30.80	c.2.1.7,c.58.1.5	85995,85996
1pdoA	135	35.12	c.54.1.1	33376
2avxA	171	39.61		
2feaA	236	39.90	c.108.1.20	133327
2bitX	165	41.84	b.62.1.1	128590
3bedA	142	42.39		
1h9mA	145	42.46	b.40.6.2,b.40.6.2	60833,60834
1ptmA	329	43.82	c.77.1.3	95104
2fkiA	126	46.62	d.198.3.1	133657
2qq9A	226	47.40		
1h72C	296	48.41	d.14.1.5,d.58.26.1	60712,60713
1bymA	97	49.98	b.34.1.2	24458
2oggA	152	50.57		
2iacA	142	53.16		
1zd0A	150	54.97	d.329.1.1	124927
1fgs	428	58.97		
2akoA	251	62.27	c.73.1.3	126923
1vi2A	300	67.33	c.2.1.7,c.58.1.5	100726,100727
1e19A	314	67.35	c.73.1.1	34967
1a3c	181	70.15		
2p4gA	270	71.38		
1sk7A	198	73.79	a.132.1.2	105671
1pjjA	271	76.65	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1b7bA	310	76.87	c.73.1.1	34963
2q78A	153	80.54		
1yndA	165	81.11	b.62.1.1	123721
2pjhB	193	82.94		
2gcoA	201	83.45		
1fwkA	296	83.89	d.14.1.5,d.58.26.1	37576,39398
2ogeA	399	84.28		
2nygA	273	87.96		
2vptA	215	88.59		
2z6wA	165	88.97		
1cz4A	185	89.71	b.52.2.3,d.31.1.1	26934,38468