# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	12.57		
1bi0	226	15.37		
2dtr	226	15.40		
1qw1A	121	16.05		
1pdo	135	18.01		
1fx7A	230	19.16	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1j77A	209	20.07	a.132.1.2	62674
2gcxA	75	21.33		
1uekA	275	21.96	d.14.1.5,d.58.26.5	88483,88484
2cftA	298	22.70		
1wgvA	124	24.04	b.15.1.4	114624
1c8uA	285	29.81	d.38.1.3,d.38.1.3	38547,38548
2ooiA	162	31.83		
1ryjA	70	34.36	d.15.3.2	98104
1pdoA	135	35.17	c.54.1.1	33376
1ptmA	329	36.84	c.77.1.3	95104
2dt4A	143	37.23		
2oq0A	206	38.56		
2feaA	236	40.08	c.108.1.20	133327
1npyA	271	40.31	c.2.1.7,c.58.1.5	85995,85996
2glwA	92	44.49		
2bitX	165	46.03	b.62.1.1	128590
2fkiA	126	46.17	d.198.3.1	133657
3bedA	142	48.88		
1fgs	428	50.66		
2avxA	171	50.82		
1bymA	97	51.06	b.34.1.2	24458
1h72C	296	52.59	d.14.1.5,d.58.26.1	60712,60713
1a3c	181	53.85		
2gcoA	201	56.82		
2oggA	152	58.73		
1vi2A	300	64.92	c.2.1.7,c.58.1.5	100726,100727
2vptA	215	69.09		
2iacA	142	70.74		
2q78A	153	71.21		
1h9mA	145	71.79	b.40.6.2,b.40.6.2	60833,60834
2akoA	251	72.39	c.73.1.3	126923
1pjjA	271	72.52	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1zd0A	150	72.89	d.329.1.1	124927
2qq9A	226	74.99		
1e19A	314	79.11	c.73.1.1	34967
2ogeA	399	81.92		
1b7bA	310	83.52	c.73.1.1	34963
1yndA	165	86.54	b.62.1.1	123721
1lv2A	229	88.81	a.123.1.1	78230
1gppA	237	89.20	b.86.1.2	76262