# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qw1A	121	0.8925		
1bi0	226	3.842		
2gcxA	75	7.866		
1j77A	209	8.975	a.132.1.2	62674
2h3jA	75	12.57		
2oq0A	206	13.55		
1fx7A	230	14.81	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1npyA	271	19.52	c.2.1.7,c.58.1.5	85995,85996
1h9mA	145	20.66	b.40.6.2,b.40.6.2	60833,60834
1czaN	917	24.64	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33463,33464,33465,33466
2f5tX	233	25.36		
2gcoA	201	25.98		
1bymA	97	27.13	b.34.1.2	24458
1xruA	282	28.87	b.82.1.13	122262
2qh8A	302	29.03		
1npsA	88	33.20	b.11.1.1	23622
1h72C	296	33.24	d.14.1.5,d.58.26.1	60712,60713
1sk7A	198	37.87	a.132.1.2	105671
1hdfA	102	38.53	b.11.1.1	23627
2cftA	298	38.53		
1h9sA	140	39.26	b.40.6.2,b.40.6.2	60843,60844
1fwkA	296	39.91	d.14.1.5,d.58.26.1	37576,39398
2b71A	196	42.20	b.62.1.1	128004
2e4uA	555	50.59		
2vptA	215	55.62		
1y51A	88	57.01		
1a3c	181	64.67		
1pch	88	66.99		
1ag4	103	68.38		
2q78A	153	73.48		
2gw2A	198	80.63		
1opd	85	81.79		
2avxA	171	82.43		
1hkbA	917	84.77	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33479,33480,33481,33482
1gutA	68	85.35	b.40.6.1	65576
1uekA	275	85.60	d.14.1.5,d.58.26.5	88483,88484
2uyzB	79	85.64	d.15.1.1	140039
2bitX	165	86.07	b.62.1.1	128590
2oq1A	254	86.43	d.93.1.1,d.93.1.1	139220,139221
1kmqA	184	87.72	c.37.1.8	84412