# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2dt4A 143 0.7205 1uby 367 1.422 2z8lA 208 2.472 2ebsA 789 2.585 2dtr 226 3.087 1b9mA 265 3.334 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1mwsA 646 5.487 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 2bs3A 656 6.878 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2h3jA 75 6.883 2bs2A 660 7.161 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1tqyA 424 7.375 c.95.1.1,c.95.1.1 107245,107246 2p9wA 334 9.788 1a8e 329 12.19 1ptmA 329 13.56 c.77.1.3 95104 2ooiA 162 13.69 2glwA 92 14.77 1rwiA 270 15.22 b.68.9.1 97987 1fx7A 230 15.31 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2aq5A 402 15.93 1fc6A 388 16.11 b.36.1.3,c.14.1.2 64738,64739 1bf2 750 17.22 2ikqA 270 17.67 1uekA 275 18.07 d.14.1.5,d.58.26.5 88483,88484 3b5lB 198 18.17 1zzmA 259 18.24 c.1.9.12 125911 2gcxA 75 18.67 2a2nA 176 19.24 b.62.1.1 126041 1nrwA 288 19.72 c.108.1.10 86128 1ybiA 288 19.97 1j77A 209 20.98 a.132.1.2 62674 1jqfA 334 21.25 c.94.1.2 67086 1pdo 135 21.26 2bitX 165 21.55 b.62.1.1 128590 1sqgA 429 22.35 a.79.1.3,c.66.1.38 105912,105913 1zylA 328 23.01 1qw1A 121 23.12 1dtgA 334 23.13 c.94.1.2 35896 1c0aA 585 23.16 b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1hkbA 917 23.24 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1gppA 237 23.74 b.86.1.2 76262 1si6X 282 25.01 d.151.1.2 118968 1j7xA 302 26.20 c.14.1.2 66425 1wdeA 294 26.30 c.90.1.1 114534 2hesX 330 26.84 1aorA 605 26.89 a.110.1.1,d.152.1.1 19042,41794 1h72C 296 27.61 d.14.1.5,d.58.26.1 60712,60713 1y88A 199 28.19 a.60.4.3,c.52.1.30 116560,116561 1f46A 140 28.60 d.129.4.1 59643 1awqA 164 29.13 b.62.1.1 27461 1ryjA 70 30.70 d.15.3.2 98104 2ywwA 149 30.73 1v0jA 399 31.97 2gqwA 408 34.22 1othA 321 35.17 c.78.1.1,c.78.1.1 35260,35261 1lpjA 133 36.21 b.60.1.2 78123 1fwkA 296 36.30 d.14.1.5,d.58.26.1 37576,39398 1wgvA 124 36.31 b.15.1.4 114624 2imqX 282 36.73 1zkcA 197 36.81 b.62.1.1 125182 1ub0A 258 37.26 c.72.1.2 88394 1ei1A 391 37.35 d.14.1.3,d.122.1.2 37570,41104 2q4oA 215 37.81 c.129.1.1 139872 1t2aA 375 38.71 c.2.1.2 99078 1m15A 357 38.92 a.83.1.1,d.128.1.2 78368,78369 1wl7A 312 39.15 b.67.2.1 120996 1pdoA 135 39.46 c.54.1.1 33376 1h9mA 145 40.08 b.40.6.2,b.40.6.2 60833,60834 1souA 194 40.16 c.124.1.6 105858 2ffeA 311 40.96 c.143.1.1 133381 1oi7A 288 42.91 c.2.1.8,c.23.4.1 87049,87050 1qtwA 285 46.63 c.1.15.1 29392 2vptA 215 46.71 1gyhA 318 47.13 b.67.2.1 70757 1c30B 382 48.79 c.8.3.1,c.23.16.1 30736,31413 1ex2A 189 48.95 c.51.4.2 33225 1kxoA 184 50.76 b.60.1.1 84475 1nr0A 611 50.80 b.69.4.1,b.69.4.1 86078,86079 2o18A 340 51.20 2q78A 153 51.24 2fkiA 126 51.45 d.198.3.1 133657 2pm7B 297 52.51 2gnqA 336 53.02 1pg5A 299 53.24 c.78.1.1,c.78.1.1 104146,104147 2vduB 450 55.28 1lbqA 362 55.31 c.92.1.1 77877 1zd0A 150 56.51 d.329.1.1 124927 1wlgA 299 56.86 b.152.1.1 114726 2b5nA 323 57.18 2h14A 317 57.58 2e57A 637 57.77 3c96A 415 57.83 1khtA 192 58.60 c.37.1.1 84401 2scuA 288 59.00 c.2.1.8,c.23.4.1 30303,31131 1tbgA 340 60.68 b.69.4.1 27649 1h0cA 392 60.72 c.67.1.3 83424 2rmcA 182 60.76 b.62.1.1 27491 1t1iA 364 60.82 c.41.1.2 106248 2c31A 568 60.87 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1pulA 125 61.20 a.39.1.11 118730 1ei6A 406 61.85 c.76.1.4 90443 1p5hA 428 61.99 c.123.1.1 87802 1ndh 272 62.88 1tv9A 335 62.96 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 1a9xB 379 64.46 c.8.3.1,c.23.16.1 30732,31409 2akoA 251 64.72 c.73.1.3 126923 1sk7A 198 65.03 a.132.1.2 105671 2p5xA 230 66.23 2iutA 574 67.08 1bymA 97 71.18 b.34.1.2 24458 2c4mA 796 72.78 1fk9A 543 74.32 c.55.3.1,e.8.1.2 33607,43080 2pkeA 251 75.72 2oggA 152 76.85 2ccmA 191 78.60 1zunB 434 78.91 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2cohA 202 79.09 a.4.5.4,b.82.3.2 130677,130678 2dekA 265 80.03 c.90.1.1 131430 2fs6A 137 80.39 b.60.1.2 134005 1dar 691 81.68 2cdqA 510 82.72 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 2qxxA 190 83.44 1pe9A 361 85.52 b.80.1.1 94595 1mu5A 471 86.06 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 2pjhB 193 87.90 1ml4A 308 88.68 c.78.1.1,c.78.1.1 79255,79256 1vheA 373 89.26 b.49.3.1,c.56.5.4 100669,100670